- Transcript 'KH2012:KH.S555.1.v1....'
Transcript Model
Transcript Id
KH2012:KH.S555.1.v1.A.nonSL1-1
Possible name(s)
HTR1A; HTR5A; HTR7
Gene model
Location
KhS555 [26,931 / 32,139]
Amino acid sequence
Length: 343
>KH.S555.1.v1.A.nonSL1-1
SRKRECDVTKKSIMLELDNSSLPGNKTEVYKLPQVEIVFLLIVIVIGSIGNLLIIGSIRC
ERRLKNSGVGFITNLALADLAITAWYMPVVLANVLSGYRNVFEGSWLCEFTGFLSCLCCE
ASLCTLMFISMDRYWKLIRPGSYETWFSKRSTLGWIAFIWIASFLIALPLIVGWQGSPPL
LTFNEKMMSCMWNDEVAYGYNIFLVSTAIFVPLCATGFFYFNIFAHVRRTRKKNATREIA
SPNGSSIRAIQKQSTVSESEEGQSSSSVVQNVRPHHSRHSSINSHKNARSKRVGERERAL
MLTLMVVVVFFVLFWCPIWRYDVGVASKCECVGETGLWLACSK
Nucleotide sequence
Length: 1,535
>KH2012:KH.S555.1.v1.A.nonSL1-1
GTTGATTGTGGAAGCATCGAAGCTAGTAACGTGTTGTAGTGTAAAGGTATTGTTACGTGT
AAGGTGTTATTGTGACGACACAGTTAAAAAGATAGTGAAGCAGAAAACGTGAATGTGACG
TCACAAAGAAGTCGATTATGTTAGAATTAGACAACTCTTCGTTGCCAGGCAACAAAACGG
AAGTTTATAAACTGCCACAAGTCGAAATCGTGTTTCTGTTGATTGTCATCGTGATCGGGT
CGATCGGAAATCTGTTGATTATCGGCTCCATAAGATGCGAACGCCGTCTCAAGAACTCAG
GAGTTGGTTTTATTACAAACCTAGCGCTGGCTGATCTGGCAATCACAGCATGGTATATGC
CGGTTGTGCTTGCCAATGTTCTGTCGGGATACAGGAACGTATTTGAGGGTTCGTGGTTAT
GCGAGTTCACGGGATTCTTGTCTTGTTTATGTTGCGAGGCATCCTTGTGCACGTTGATGT
TTATATCAATGGACAGATATTGGAAACTTATTCGTCCTGGTTCATATGAGACTTGGTTCA
GCAAAAGGTCGACACTGGGGTGGATTGCATTTATCTGGATTGCGAGTTTCTTGATCGCAT
TACCATTGATTGTGGGCTGGCAAGGGAGTCCCCCTTTGCTTACGTTTAACGAAAAGATGA
TGTCTTGCATGTGGAATGACGAAGTAGCATACGGGTACAACATATTCCTTGTATCGACCG
CCATCTTTGTTCCCTTATGCGCCACCGGGTTCTTCTACTTCAATATTTTCGCGCACGTGA
GACGGACAAGGAAAAAAAACGCGACCCGGGAAATAGCGTCACCTAACGGAAGCTCGATAC
GGGCAATCCAGAAGCAATCAACCGTATCTGAATCTGAAGAAGGTCAAAGTTCATCGTCAG
TCGTGCAGAACGTTCGTCCGCACCATTCGCGACATAGTTCTATAAATAGTCACAAAAACG
CTCGATCAAAGCGGGTTGGGGAACGAGAACGAGCGCTGATGTTGACCTTAATGGTCGTTG
TTGTATTCTTCGTATTATTCTGGTGTCCCATATGGCGTTATGACGTTGGTGTGGCATCAA
AATGTGAGTGCGTTGGCGAAACGGGCTTGTGGTTGGCTTGCTCTAAGTAACAGTGCCATT
AATAGCTTCATATACGGGATCATGAATCGAAACTTTCGTCGAGGTTACGTCACTCTCATA
AAACGTATGCGTGACGTCATATGTTGCGGACGAAACGTGACTGGGGCAATGTCGAAAACG
AAGCCCTGGTTATGCGTAACGCAGCAGAAGGATACGTCAGAGGATGACGTCAAACAACAC
AGCGTTAAATTTGGATAAACTGTTAGGATTATTTTTATTACTGTATTTTTTTTACTTTTT
ACCGCCGTACAGGGTACTCTTGTTTTTTATTTATATTGCATAAATGTTGCCAATGTTGTT
GCTGAAATAAAGTATTGTTTTTATTAAATTGTTCATTTTTATGAAACCTTGATATTCAAA
ATATATATCCTCTTGTGTCTTTAGATATAGTAGGA
| PANTHER |
Mel_rcpt_1 (IPR027459) - T[14-343] 2.4E-105 |
| PRINTS |
GPCR_Rhodpsn (IPR000276) - T[35-59] 7.9E-21 - T[68-89] 7.9E-21 - T[115-137] 7.9E-21 - T[151-172] 7.9E-21 - T[201-224] 7.9E-21 - T[300-324] 7.9E-21 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[50-318] 28.596 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[50-318] 6.5E-41 |
| ProSitePatterns |
GPCR_Rhodpsn (IPR000276) - T[121-137] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| 5HT7R_HUMAN | 25.667 % | 95.9 | 7.93E-22 |
| ADA1B_HUMAN | 26.183 % | 89.7 | 1.09E-19 |
| 5HT1A_HUMAN | 24.471 % | 89.4 | 8.64E-20 |