- Transcript 'KH2012:KH.C2.917.v1....' >
- Transcript 'KH2012:KH.L18.20.v1....' >
- Transcript 'KH2012:KH.L18.20.v2....' >
- Transcript 'KH2012:KH.L18.20.v1....' >
- Transcript 'KH2012:KH.S654.1.v1....'
Transcript Model
Transcript Id
KH2012:KH.S654.1.v1.A.nonSL1-1
Possible name(s)
TBX2; TBX3; TBX6
Gene model
Location
KhS654 [34,468 / 36,164]
Amino acid sequence
Length: 402
>KH.S654.1.v1.A.nonSL1-1
RIKCILSTDTYKTTLRNKMATDVRGSTFEPKVHLEDWKLWEQFSAVQTEMIVTKTGRRMF
PGYRVKMSGMDPNAQYCVLMDISSVDENRYKFQHGEWVVAGRGEPQVPQRFYLHPNSPCS
GQQWMKEIISFHKVKLTNSCGNSADGKFLIHSMHRYQPRIHIVRTDDVNTLHLQPMSTFA
FPQTAFVTVTAYQNGQITKLKIANNPFARGFREDGAKTKKRKSQVSTFTDQQVLTKNNQR
YSPEATTLNFEKRMKFENVLSGEHVHLQPTAWYQSTNHFLPADCKQSYSTSLHPQNHNGS
PPPYAFQYSDVSPCNNRYDFSVANNPIHPQNIQYYDQQPPFDSVFPFHNNYAYHDEVMSN
PISSSEVDSISYFSSPQNSPDDVHPENTQFCYNNFQYIDTFA
Nucleotide sequence
Length: 1,350
>KH2012:KH.S654.1.v1.A.nonSL1-1
AATATTCTTAAAGAATCAAGTGTATCCTGTCAACTGACACCTACAAGACAACACTTCGTA
ACAAAATGGCGACAGACGTGAGAGGCTCAACCTTCGAACCAAAAGTTCATCTTGAAGATT
GGAAGTTATGGGAACAATTTTCAGCTGTTCAAACTGAAATGATCGTCACCAAGACTGGGA
GGCGAATGTTTCCCGGCTATCGAGTAAAAATGTCGGGAATGGACCCGAATGCTCAATATT
GCGTACTGATGGATATTTCGAGCGTGGACGAAAACAGATACAAGTTTCAACACGGGGAGT
GGGTGGTAGCGGGTCGAGGAGAACCCCAAGTTCCGCAGAGATTTTATTTACACCCCAACT
CACCTTGCAGCGGGCAACAATGGATGAAAGAAATTATTTCGTTTCATAAAGTAAAACTCA
CAAACTCTTGTGGAAACTCAGCTGATGGGAAGTTCCTCATACACTCCATGCATCGGTACC
AACCTCGTATCCACATCGTTCGTACTGATGACGTCAATACTTTGCATCTTCAACCGATGT
CAACTTTCGCTTTTCCACAAACTGCTTTCGTCACAGTTACAGCCTACCAAAACGGACAGA
TCACTAAACTGAAGATCGCAAACAATCCGTTTGCACGAGGTTTCCGTGAAGACGGTGCTA
AAACAAAGAAGAGAAAATCACAAGTTTCAACATTTACGGATCAACAAGTCCTCACTAAAA
ATAACCAGAGATATTCCCCCGAGGCAACAACACTGAATTTTGAAAAAAGAATGAAGTTCG
AAAATGTATTGAGTGGTGAACATGTTCACCTACAACCAACGGCATGGTACCAGAGCACAA
ATCACTTCCTACCCGCTGATTGTAAACAAAGTTATTCTACTTCACTACATCCTCAGAATC
ATAATGGGTCACCACCACCATATGCATTCCAATATTCTGACGTCAGTCCCTGCAATAATC
GCTACGACTTCTCGGTCGCAAACAATCCAATTCATCCACAGAATATTCAGTATTACGACC
AACAACCACCATTTGATTCGGTATTTCCCTTCCATAACAACTATGCTTACCACGACGAAG
TGATGTCCAATCCCATTAGTTCATCTGAAGTTGATTCCATAAGTTATTTCAGTTCGCCAC
AAAATTCACCTGATGATGTCCATCCGGAAAACACCCAATTTTGTTATAACAATTTTCAAT
ACATTGACACTTTTGCTTAAATACAAATTAATAATTAGTTCCTTGTAATATTTTTATTGC
TATAGTTCAAAAGACGTGTTGTTGTCACTGTTAGTAATTATGTGCTAATTTGTTGTTGTT
GTTATACACTCAGAATAAACCATAAAAAAT
| PANTHER |
TF_T-box (IPR001699) - T[11-239] 1.4E-130 |
| Gene3D |
T-box_sf (IPR036960) - T[27-220] 2.3E-83 |
| SMART |
TF_T-box (IPR001699) - T[29-218] 7.5E-105 |
| CDD |
TF_T-box (IPR001699) - T[30-215] 1.19401E-106 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[30-213] 4.6E-72 |
| Pfam |
TF_T-box (IPR001699) - T[32-213] 2.3E-76 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[34-213] 70.925 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[39-58] . - T[113-131] . |
| PRINTS |
TF_T-box (IPR001699) - T[47-71] 6.1E-40 - T[112-125] 6.1E-40 - T[129-138] 6.1E-40 - T[149-163] 6.1E-40 - T[184-197] 6.1E-40 - T[205-213] 6.1E-40 |
| PRINTS |
TF_Brachyury (IPR002070) - T[92-112] 1.4E-6 - T[154-171] 1.4E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBX6_HUMAN | 51.832 % | 228 | 1.61E-70 |
| TBX2_HUMAN | 49.495 % | 231 | 3.37E-69 |
| TBX3_HUMAN | 46.512 % | 225 | 9.04E-67 |