- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.S654.2.v1....'
Transcript Model
Transcript Id
KH2012:KH.S654.2.v1.A.nonSL2-1
Possible name(s)
TBX2; TBX3; TBX6
Gene model
Location
KhS654 [30,754 / 32,406]
Amino acid sequence
Length: 407
>KH.S654.2.v1.A.nonSL2-1
RNSKCNLSTDTNKKTYRNKMATDMRSPTFEPKVHLQDWKLWEQFSAVQTEMIVTKTGRRM
FPGYRIKMSGMDPNAQYCVLMDISSVDENRYKFQHGEWVVAGRGEPQVPQRFYLHPNSPC
SGHQWMKEIISFHKVKLTNSCGNSADGKFLIHSMHRYQPRIHIVRTDDVNTLHLQPMSTF
AFPQTAFVTVTAYQNGQITKLKIANNPFARGFREDGAKTKKRKSQVSTFTDQQVLTKNNQ
RYSPEATTSNLEKRMKFENVLSGEHVHLQPTAWYQSTNHFLPADCKQSYSTSQQTVHPQN
HNGSPPPPYAFQYSDVSPCNNRYDFSVANNPIHPQNIQYYDQQPPFDPVFPSHNNYVYHH
KVMSNPINSSEVNSISYFTSPQNSPDDVHLENTQFCYNNFQYIDSFA
Nucleotide sequence
Length: 1,339
>KH2012:KH.S654.2.v1.A.nonSL2-1
TATCGAAAATTATTCGTAAAGAAACAGCAAGTGTAACCTGTCAACTGACACCAACAAGAA
AACATATCGTAACAAAATGGCGACAGACATGAGAAGCCCAACCTTTGAACCGAAAGTTCA
TCTTCAGGATTGGAAGTTGTGGGAACAATTTTCAGCTGTTCAAACTGAAATGATCGTTAC
CAAGACTGGGAGGCGAATGTTTCCCGGCTATCGAATAAAAATGTCGGGAATGGACCCGAA
TGCTCAATATTGCGTACTGATGGATATTTCGAGCGTGGACGAAAACAGATACAAGTTTCA
ACACGGGGAGTGGGTGGTAGCGGGTCGGGGGGAACCCCAAGTTCCGCAGAGATTTTATTT
ACACCCCAACTCACCTTGCAGCGGGCATCAATGGATGAAAGAAATCATTTCGTTTCATAA
AGTGAAACTCACAAACTCTTGTGGAAACTCAGCTGATGGAAAGTTCCTCATACACTCCAT
GCATCGGTATCAACCTCGTATCCACATCGTTCGTACTGATGACGTCAATACTCTGCATCT
ACAACCGATGTCAACTTTCGCTTTTCCACAAACTGCTTTCGTCACAGTCACGGCCTACCA
AAACGGACAGATCACTAAACTGAAAATTGCAAACAATCCGTTTGCACGAGGTTTCCGTGA
AGACGGTGCTAAAACAAAGAAGAGAAAATCACAAGTTTCAACATTTACGGATCAACAAGT
CCTTACTAAAAATAATCAGAGATATTCCCCCGAAGCAACAACATCGAATTTGGAAAAAAG
AATGAAGTTCGAAAATGTATTGAGTGGTGAACATGTTCACCTACAACCAACGGCATGGTA
CCAGAGCACAAATCACTTCCTACCCGCTGATTGTAAACAAAGTTATTCTACTTCACAACA
AACTGTACATCCTCAGAATCATAATGGGTCACCACCACCACCATATGCATTCCAATATTC
TGACGTCAGTCCTTGCAATAATCGCTACGACTTCTCGGTCGCAAACAATCCAATTCATCC
ACAGAATATTCAGTATTACGACCAACAACCACCATTTGATCCGGTATTTCCCTCCCATAA
CAATTATGTTTACCACCACAAAGTGATGTCCAATCCCATTAATTCATCTGAAGTTAATTC
AATAAGTTATTTCACTTCGCCACAAAATTCACCTGATGATGTCCATCTGGAAAACACCCA
ATTTTGTTATAACAATTTTCAATACATTGACAGTTTTGCTTAAATACAAATTTGAAAGTT
CCTTTTAATACTTTTTTGTTATTGTTCGAAAAATGCGTTTTTGTCACTGTTAGTAATTGT
GTCCTATAGTTGAATAAAA
| PANTHER |
TF_T-box (IPR001699) - T[15-248] 1.1E-127 |
| Gene3D |
T-box_sf (IPR036960) - T[28-222] 7.3E-83 |
| SMART |
TF_T-box (IPR001699) - T[30-219] 1.4E-103 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[31-214] 1.74E-71 |
| CDD |
TF_T-box (IPR001699) - T[31-216] 2.6486E-105 |
| Pfam |
TF_T-box (IPR001699) - T[33-214] 6.5E-76 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[35-214] 70.703 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[40-59] . - T[114-132] . |
| PRINTS |
TF_T-box (IPR001699) - T[48-72] 1.1E-39 - T[113-126] 1.1E-39 - T[130-139] 1.1E-39 - T[150-164] 1.1E-39 - T[185-198] 1.1E-39 - T[206-214] 1.1E-39 |
| PRINTS |
TF_Brachyury (IPR002070) - T[93-113] 1.5E-6 - T[155-172] 1.5E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBX6_HUMAN | 50.785 % | 225 | 1.53E-69 |
| TBX2_HUMAN | 48.485 % | 228 | 3.63E-68 |
| TBX3_HUMAN | 43.277 % | 223 | 4.71E-66 |