- Region 'REG00001110' >
- Region 'REG00001305' >
- Transcript 'KH2012:KH.S654.3.v1....'
Transcript Model
Transcript Id
KH2012:KH.S654.3.v1.A.nonSL3-1
Possible name(s)
TBX2; TBX4; TBX6
Gene model
Location
KhS654 [24,539 / 26,926]
Amino acid sequence
Length: 578
>KH.S654.3.v1.A.nonSL3-1
KYELNRKREEIVSFIGPDKTMANMIPIHWQNEIDQEHQSLINNFQLPFRESDASSPKENQ
LTPTWQDEKFHQADLPSYHEPTNPSELQMGLSQPPQTRFYQSQPRTEAHAIRSPLDPQVQ
VHLHDRQLWDSFSAAQTEMIVTKTGRRMFPGYRVKMSGMDPNAQYCVLMDISSVDENRYK
FQHGEWVVAGRGEPQVPQRFYLHPNSPCSGQQWMKEIISFHKVKLTNSCGNSADGKFLIH
SMHRYQPRIHIVRTDDVNTLHLQPMSTFAFPQTVFVTVTAYQNHEVTKLKINNNPFARGF
RSNGGKTKNMLAQNQQCDLHVVEPNIPQEYSRKRVQPSQLGDDLAQMAKRWHGSSPYHEN
IYKTQHPILSPAYSNTTQHHYNSTFQHPMPLNEISHNQPNNQYYQPYNHYSPPQAQYIES
EHFDFRPAQSNMQASPVFSADSNSPTHTESHLELSVPTTTSSFYNQQVNLENVVSQTPTS
FVPTTHPITTACGTVQVANCFRSPLDSTDEGYISTSLSNPDEEIKEVTDVISTLNDVLST
DVSPNNIGPANSNSAEINGDISCAINLLATSASFSPIY
Nucleotide sequence
Length: 1,894
>KH2012:KH.S654.3.v1.A.nonSL3-1
TTCCGCTTTCTGTTCTCATTGGATATACACCAAACTGAAAGTACGAGTTAAATCGAAAGA
GAGAGGAAATTGTAAGTTTTATTGGACCAGACAAGACTATGGCGAATATGATTCCAATTC
ATTGGCAAAATGAGATTGATCAAGAACATCAGAGTTTGATAAATAATTTCCAACTTCCTT
TTCGTGAATCGGATGCTTCGAGCCCAAAGGAAAATCAATTAACACCAACTTGGCAAGATG
AAAAGTTTCACCAAGCAGATTTACCCAGCTACCATGAACCAACAAATCCCTCGGAACTAC
AAATGGGTTTATCACAACCGCCACAAACCCGATTTTATCAAAGTCAACCAAGAACCGAGG
CCCACGCAATTCGTTCACCGCTGGATCCACAGGTTCAAGTTCATCTACATGACCGGCAGT
TGTGGGATAGTTTTTCAGCGGCACAGACTGAAATGATCGTTACAAAAACTGGAAGGCGAA
TGTTTCCCGGCTATCGAGTAAAAATGTCGGGAATGGACCCGAATGCTCAATATTGCGTAC
TGATGGATATTTCGAGCGTGGACGAAAACAGATACAAGTTTCAACACGGGGAGTGGGTGG
TAGCGGGTCGGGGAGAACCCCAAGTTCCGCAGAGATTTTATTTACACCCCAACTCACCTT
GCAGCGGGCAACAATGGATGAAAGAAATTATTTCGTTTCATAAAGTAAAACTCACAAACT
CTTGTGGAAACTCAGCCGATGGAAAGTTCCTCATACACTCCATGCATCGGTATCAACCTC
GTATCCACATCGTTCGTACTGATGACGTCAATACTTTGCATCTTCAACCGATGTCAACTT
TCGCTTTTCCGCAAACTGTTTTCGTCACAGTAACCGCTTATCAAAATCACGAGGTTACCA
AATTGAAAATAAACAACAACCCATTTGCTCGGGGTTTTCGCTCAAATGGAGGAAAAACCA
AAAATATGCTTGCACAAAACCAACAATGCGATCTTCATGTCGTCGAACCAAATATCCCGC
AAGAATATTCAAGAAAGAGAGTACAACCATCTCAACTTGGCGACGATCTCGCACAAATGG
CAAAACGCTGGCATGGGAGCTCACCTTATCATGAAAATATTTACAAGACCCAACATCCCA
TACTGTCGCCAGCATATTCCAACACAACACAACATCACTACAATTCCACTTTCCAACACC
CGATGCCGCTGAATGAAATCAGTCACAACCAGCCAAATAATCAATATTATCAGCCCTATA
ATCACTATTCCCCTCCACAAGCACAATATATTGAGAGTGAACATTTTGACTTCAGGCCAG
CACAGTCAAACATGCAAGCGTCCCCGGTATTTTCGGCAGACTCCAACAGCCCCACACACA
CAGAATCACATCTCGAGCTCAGCGTACCAACGACCACATCTTCGTTTTATAACCAGCAAG
TCAATTTAGAAAATGTTGTTTCTCAAACACCTACCAGTTTCGTGCCCACGACGCACCCAA
TTACTACTGCATGCGGCACTGTACAAGTTGCCAACTGTTTTCGGTCTCCACTGGATTCAA
CTGACGAGGGATATATTTCTACGTCACTGAGCAACCCCGATGAAGAAATAAAAGAAGTCA
CCGACGTGATCTCTACTCTAAATGACGTATTATCGACGGATGTTTCACCAAACAACATTG
GACCAGCCAACTCCAACTCTGCTGAAATTAATGGAGACATAAGTTGTGCAATTAATCTTT
TGGCAACCTCTGCTTCATTTAGCCCGATTTATTAAATGTAAATATTTTTATGCGTCTCCC
CATTCTTGTATTTATGATTTATTTGTATTTATAAACCAAACATCAGTTCGATTTTGTACC
GCGTGTTTTCCAATACAATTTTCTACACCAACAA
| PANTHER |
TF_T-box (IPR001699) - T[21-578] 1.3E-231 |
| Gene3D |
T-box_sf (IPR036960) - T[116-308] 1.4E-82 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[118-302] 1.49E-72 |
| SMART |
TF_T-box (IPR001699) - T[118-307] 2.1E-106 |
| CDD |
TF_T-box (IPR001699) - T[118-304] 4.21836E-107 |
| Pfam |
TF_T-box (IPR001699) - T[121-301] 1.5E-75 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[123-302] 71.324 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[128-147] . - T[202-220] . |
| PRINTS |
TF_T-box (IPR001699) - T[136-160] 4.5E-39 - T[201-214] 4.5E-39 - T[218-227] 4.5E-39 - T[238-252] 4.5E-39 - T[273-286] 4.5E-39 - T[294-302] 4.5E-39 |
| PRINTS |
TF_Brachyury (IPR002070) - T[181-201] 2.7E-6 - T[243-260] 2.7E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBX6_HUMAN | 46.977 % | 227 | 3.45E-68 |
| TBX2_HUMAN | 47.115 % | 226 | 1.77E-65 |
| TBX4_HUMAN | 50.265 % | 220 | 1.23E-64 |