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TRANSCRIPT CARD

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  1. Region 'REG00000417' > 
  2. Transcript 'Cisavi.CG.ENS81.R22....' > 
  3. Transcript 'KH2012:KH.S966.3.v2....' > 
  4. Clone 'AHC0AAA177YJ09' > 
  5. Transcript 'KH2012:KH.S753.2.v1....'

Transcript Model

Transcript Id

KH2012:KH.S753.2.v1.A.SL2-1

Possible name(s)

ADGRB3; CFP; HMCN1

Gene model

KH2012:KH.S753.2

Location

KhS753 [7,206 / 12,961]

Sequences

Amino acid sequence

Length: 558

>KH.S753.2.v1.A.SL2-1
GYSFIDTSLPRMRLAVLLCVIAVVTVVEGQTNIGKNCNVYPRRECGQQISTRAVCNSFPL
CCFDPIHTPNCYRAQVAHSLASVLQAQILNTVRQVPRPLNLNPLLVGVQSPVISQDVRNS
LQSYITNLGIPAALTSSPQCPVNVPICYRTKCGSTVDSETNPVSCMQDPKCCFDNDLLVY
RQLFGPVYMQGAPTCYHGPTASKYLQLANSIRPWNPYYQGYIINSFRAVNINLNTVCQAS
SLINFAFLAQPICGWPGITKLECELKGCCFTALNNKCTYPTFGQHCTAVCGGGSGIQTRY
RTCEGNGNTVASVNCAGQHYSTRPCSASNCVRVTEWGSWSQCSVTCGGGTRSRRRQCFRD
NVQVFGNCPQAVTQNQPGCSSSSCQQSDPRIAWSSWTQWSACSATCANGVSFRTRSCRYR
SSTELSANICIDIYNGTSGSEDRVCQSGPCPAIVTYSWTIWASYRPCPCGSSSQTKRRYC
VGSDGRIHTNGCPGNSTSSRACQGPPCMTWAPWSNWDACSKTCGRGMQVRVRCKRTDTVN
CIATTVEFGEKNCTIREC

Nucleotide sequence

Length: 2,009

>KH2012:KH.S753.2.v1.A.SL2-1
GGATATAGTTTTATAGATACAAGCTTACCGAGAATGAGATTGGCTGTGCTTTTATGCGTT
ATAGCTGTAGTAACAGTTGTGGAAGGACAGACTAACATCGGCAAAAACTGCAATGTCTAT
CCACGAAGAGAATGTGGACAACAAATAAGCACGAGAGCAGTCTGCAACAGTTTTCCTCTG
TGTTGCTTCGACCCCATACACACTCCCAACTGCTACAGAGCTCAAGTCGCTCATAGTTTA
GCATCAGTCCTTCAAGCTCAGATTCTGAACACAGTAAGACAAGTTCCACGCCCTTTGAAC
CTGAACCCATTACTGGTCGGTGTACAGAGTCCCGTGATAAGTCAAGACGTTCGTAACTCG
CTTCAAAGTTACATCACAAATCTTGGAATACCAGCTGCTCTTACGTCATCACCCCAATGT
CCAGTAAACGTCCCAATTTGTTACAGAACTAAATGTGGATCAACCGTCGACTCCGAAACC
AACCCAGTTTCTTGCATGCAAGACCCGAAGTGTTGCTTCGACAATGATCTGCTCGTATAT
CGACAGTTGTTTGGTCCTGTTTACATGCAAGGCGCACCAACCTGTTACCATGGGCCCACT
GCGTCAAAATATTTGCAACTTGCAAACTCGATTCGGCCCTGGAACCCTTACTACCAAGGA
TACATCATAAACTCATTCAGAGCGGTTAACATCAACTTAAACACAGTGTGCCAAGCTTCT
AGTCTTATAAACTTTGCCTTTCTTGCGCAACCCATATGCGGCTGGCCGGGTATAACGAAG
CTGGAATGCGAACTTAAGGGTTGTTGCTTTACCGCATTAAACAACAAATGTACATACCCT
ACTTTTGGACAGCACTGTACTGCTGTATGTGGTGGTGGAAGTGGAATTCAAACAAGGTAC
AGAACTTGTGAGGGGAATGGGAATACTGTGGCATCGGTTAATTGCGCTGGGCAGCATTAC
TCCACTCGTCCATGCTCAGCGTCTAACTGTGTACGAGTTACTGAATGGGGATCCTGGAGT
CAATGTTCAGTGACATGCGGAGGTGGTACTCGATCCAGGCGTCGTCAATGTTTCCGAGAT
AACGTCCAAGTCTTTGGTAACTGCCCACAAGCAGTAACTCAAAACCAGCCAGGTTGTTCA
AGCTCAAGCTGCCAGCAATCTGACCCTCGTATTGCGTGGTCGAGTTGGACCCAGTGGAGC
GCTTGCTCTGCAACTTGTGCAAACGGTGTCAGTTTCCGCACTCGCTCATGTCGTTACCGA
TCAAGCACCGAGCTTTCGGCCAATATTTGCATTGACATTTATAATGGAACGTCTGGTAGC
GAAGACAGAGTATGCCAGAGTGGACCATGCCCGGCTATCGTGACGTATTCCTGGACAATA
TGGGCATCATACCGACCATGTCCTTGTGGGTCATCTAGCCAAACAAAACGTCGATACTGC
GTTGGTTCAGATGGACGGATACACACCAATGGATGCCCGGGCAATTCAACAAGTTCCCGT
GCTTGCCAAGGACCTCCATGTATGACGTGGGCACCTTGGAGTAACTGGGACGCTTGTTCC
AAAACATGCGGACGCGGAATGCAAGTTCGTGTTAGATGCAAGAGAACTGACACCGTTAAC
TGCATCGCAACCACGGTAGAATTTGGAGAGAAAAACTGCACAATACGAGAATGTTGATGT
TTCTGCTACGCAAAAAACCGTCTTATAACTTATGCTTTAAAGCTGGCTTACACTAAAATT
TACAATGTGCCAGTGCATGCATGGTCGACTATATATATTATGTCACAGCCGGCCGTCAAG
GATACCTCTCAAAAACAAAGGCAGCAGCAGCGCCGGTACTTATATACACTATACACTTCT
ACGCCTCAACCCGGTCTCTCAGAGCCGACCAACGCGTCGGTATCCCGCAGAAATATTTAG
TAGGCTATGGTGTAAATATTAAGTTGTACATAAAGATGCATCTGTACTGACGTTACTGAA
AACGAAGAAATAAAAAACAACATATTGTT

InterProScan

ProSiteProfiles
P_trefoil_dom (IPR000519) - T[235-281] 9.456
SMART
TSP1_rpt (IPR000884) - T[279-331] 0.27 - T[333-385] 7.9E-8 - T[393-451] 5.3E-8 - T[458-508] 5.9 - T[510-554] 2.1E-5
SUPERFAMILY
TSP1_rpt_sf (IPR036383) - T[284-330] 4.71E-5 - T[332-372] 7.46E-9 - T[392-450] 7.46E-8 - T[454-507] 2.22E-5 - T[507-537] 9.55E-7
Pfam
TSP1_rpt (IPR000884) - T[285-330] 8.4E-4 - T[335-384] 1.2E-7 - T[394-420] 1.2E-6 - T[461-507] 0.016 - T[512-558] 1.7E-6
Gene3D
TSP1_rpt_sf (IPR036383) - T[329-384] 7.0E-10 - T[391-451] 1.8E-9 - T[508-558] 3.2E-6
ProSiteProfiles
TSP1_rpt (IPR000884) - T[330-451] 11.418 - T[455-506] 8.581 - T[507-557] 9.19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
HMCN1_HUMAN 29.02 % 91.3 5.13E-19