- Transcript 'KH2012:KH.C8.511.v1....' >
- Region 'REG00000094' >
- Transcript 'KH2012:KH.S816.1.v1....'
Transcript Model
Transcript Id
KH2012:KH.S816.1.v1.A.ND1-1
Possible name(s)
ZIC2; ZIC3; ZIC4
Gene model
Location
KhS816 [14,595 / 16,229]
Amino acid sequence
Length: 420
>KH.S816.1.v1.A.ND1-1
HATGTNTKVNQRDVISLRQSAYQRSSSSYNMYSNVMVDRPYAAYDPRASLTAHASFLQGH
QQPIDSKSYSMANHPSASYYPGYGMIPHFAQSLESHLQGMHNFNSRENFHPVQYPTHSTL
TNPIACKWRNVKNGGRSCDVIFHDMHELVNHVTRDHVGGMDQTDHTCYWEDCSRKRKGFK
AKYKLVNHIRVHTGEKPFVCPFPDCGKTFGRSENLKIHQRTHTGERPFPCKFPGCERRFA
NSSDRKKHSYMHNTEKLYACKYEGCDRSYTHPSSLRKHIRMHESNGDVIDKGSIHSPTSS
CGSVEDVAREQNSIENNFVQTYLPPRFTSSPIHAPLATYDASESLKQKFPPIEKQAKSTE
HFINHGQDMTSSLPQLNLNTASTEDCYNEYQFPQNSNSLPKSLMPAYFDVPAHCTAHFVA
Nucleotide sequence
Length: 1,461
>KH2012:KH.S816.1.v1.A.ND1-1
GAAGGCGTAGCACGCGACAGGTACAAATACCAAGGTCAATCAGCGTGATGTCATTAGTTT
ACGGCAGTCAGCATACCAGAGAAGTTCATCATCTTACAATATGTATTCTAATGTAATGGT
TGATCGTCCCTATGCAGCATATGATCCAAGAGCAAGTCTAACAGCTCACGCATCGTTTCT
TCAAGGACACCAACAACCCATTGATTCCAAGTCTTACTCGATGGCTAATCATCCAAGTGC
GTCATATTACCCAGGATATGGGATGATTCCTCATTTTGCTCAATCCTTGGAGTCTCACCT
TCAAGGAATGCACAACTTCAACAGTAGAGAAAATTTTCATCCAGTGCAATATCCGACGCA
TTCGACTCTCACGAATCCGATTGCTTGCAAGTGGAGAAATGTTAAGAATGGCGGTCGCTC
GTGTGACGTCATATTTCACGATATGCACGAGTTGGTAAACCACGTGACACGGGATCACGT
GGGTGGTATGGATCAAACCGACCACACCTGCTACTGGGAAGATTGTTCAAGAAAACGCAA
AGGTTTCAAAGCAAAGTACAAATTGGTGAATCATATTCGAGTTCATACTGGGGAGAAACC
ATTTGTTTGCCCTTTTCCTGATTGTGGAAAAACGTTTGGAAGAAGCGAGAATTTAAAAAT
CCATCAAAGAACCCACACAGGTGAACGACCCTTTCCTTGTAAATTTCCCGGATGTGAAAG
ACGGTTTGCAAACAGTTCCGATCGTAAGAAGCATAGTTATATGCACAACACTGAAAAACT
TTATGCGTGTAAGTACGAAGGTTGCGACCGAAGCTACACTCATCCCAGTTCACTACGTAA
GCACATACGTATGCATGAATCCAATGGTGACGTAATCGACAAAGGTTCCATTCATTCTCC
CACAAGCTCGTGTGGTTCAGTAGAAGATGTAGCTCGAGAACAAAACTCCATTGAAAATAA
TTTCGTTCAAACATATTTACCTCCACGATTTACGTCATCGCCGATTCATGCACCTTTAGC
CACTTATGATGCTTCAGAAAGTTTAAAACAAAAGTTTCCCCCTATTGAGAAGCAAGCTAA
ATCCACAGAACATTTTATAAACCACGGACAAGATATGACATCATCTCTACCTCAATTAAA
CTTGAACACAGCTTCAACCGAAGATTGTTACAACGAATATCAATTTCCTCAAAACTCCAA
CTCTTTACCTAAATCACTGATGCCCGCATATTTCGATGTCCCTGCTCACTGTACAGCTCA
CTTCGTTGCTTGATTGTTATATGATATCAGACTGTTTTTCCTGTCATATTGTTTTTGTAA
AATATAAACTTTTTGAAATGGCTTAACAAAATGTACCTGAACACACACCTACAACAACTT
GCCGCGAAATGGTAAAGTCAAATTTAAAACCGCAACAACCTATTTAGCAATTTAGCCAAT
TAAGAATGCGCTTAGCTATAG
| SMART |
Znf_C2H2_type (IPR013087) - T[124-156] 230.0 - T[165-192] 6.0 - T[198-222] 1.0E-4 - T[228-252] 0.044 - T[258-282] 1.8E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[170-197] 11.281 - T[198-227] 17.059 - T[228-257] 10.408 - T[258-287] 11.24 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[179-235] 4.09E-20 - T[239-283] 8.1E-10 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[200-222] . - T[230-252] . - T[260-282] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZIC4_HUMAN | 60.428 % | 241 | 1.07E-76 |
| ZIC2_HUMAN | 59.067 % | 242 | 7.58E-75 |
| ZIC3_HUMAN | 63.187 % | 245 | 1.07E-76 |