- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'Phfumi.CG.MTP2014.S4...' >
- Transcript 'Boleac.CG.SB_v3.S270...' >
- Transcript 'KH2012:KH.C1.73.v2.A...' >
- Transcript 'KH2012:KH.S816.1.v1....'
Transcript Model
Transcript Id
KH2012:KH.S816.1.v1.A.nonSL2-1
Possible name(s)
ZIC2; ZIC3; ZIC4
Gene model
Location
KhS816 [14,595 / 15,735]
Amino acid sequence
Length: 258
>KH.S816.1.v1.A.nonSL2-1
TDHTCYWEDCSRKRKGFKAKYKLVNHIRVHTGEKPFVCPFPDCGKTFGRSENLKIHQRTH
TGERPFPCKFPGCERRFANSSDRKKHSYMHNTEKLYACKYEGCDRSYTHPSSLRKHIRMH
ESNGDVIDKGSIHSPTSSCGSVEDVAREQNSIENNFVQTYLPPRFTSSPIHAPLATYDAS
ESLKQKFPPIEKQAKSTEHFINHGQDMTSSLPQLNLNTASTEDCYNEYQFPQNSNSLPKS
LMPAYFDVPAHCTAHFVA
Nucleotide sequence
Length: 967
>KH2012:KH.S816.1.v1.A.nonSL2-1
AAACCGACCACACCTGCTACTGGGAAGATTGTTCAAGAAAACGCAAAGGTTTCAAAGCAA
AGTACAAATTGGTGAATCATATTCGAGTTCATACTGGGGAGAAACCATTTGTTTGCCCTT
TTCCTGATTGTGGAAAAACGTTTGGAAGAAGCGAGAATTTAAAAATCCATCAAAGAACCC
ACACAGGTGAACGACCCTTTCCTTGTAAATTTCCCGGATGTGAAAGACGGTTTGCAAACA
GTTCCGATCGTAAGAAGCATAGTTATATGCACAACACTGAAAAACTTTATGCGTGTAAGT
ACGAAGGTTGCGACCGAAGCTACACTCATCCCAGTTCACTACGTAAGCACATACGTATGC
ATGAATCCAATGGTGACGTAATCGACAAAGGTTCCATTCATTCTCCCACAAGCTCGTGTG
GTTCAGTAGAAGATGTAGCTCGAGAACAAAACTCCATTGAAAATAATTTCGTTCAAACAT
ATTTACCTCCACGATTTACGTCATCGCCGATTCATGCACCTTTAGCCACTTATGATGCTT
CAGAAAGTTTAAAACAAAAGTTTCCCCCTATTGAGAAGCAAGCTAAATCCACAGAACATT
TTATAAACCACGGACAAGATATGACATCATCTCTACCTCAATTAAACTTGAACACAGCTT
CAACCGAAGATTGTTACAACGAATATCAATTTCCTCAAAACTCCAACTCTTTACCTAAAT
CACTGATGCCCGCATATTTCGATGTCCCTGCTCACTGTACAGCTCACTTCGTTGCTTGAT
TGTTATATGATATCAGACTGTTTTTCCTGTCATATTGTTTTTGTAAAATATAAACTTTTT
GAAATGGCTTAACAAAATGTACCTGAACACACACCTACAACAACTTGCCGCGAAATGGTA
AAGTCAAATTTAAAACCGCAACAACCTATTTAGCAATTTAGCCAATTAAGAATGCGCTTA
GCTATAG
| SMART |
Znf_C2H2_type (IPR013087) - T[3-30] 6.0 - T[36-60] 1.0E-4 - T[66-90] 0.044 - T[96-120] 1.8E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[8-35] 11.281 - T[36-65] 17.059 - T[66-95] 10.408 - T[96-125] 11.24 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[17-73] 1.79E-20 - T[77-121] 1.1E-9 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[38-60] . - T[68-90] . - T[98-120] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZIC4_HUMAN | 65.068 % | 204 | 1.24E-64 |
| ZIC2_HUMAN | 67.143 % | 201 | 2.7E-61 |
| ZIC3_HUMAN | 68.345 % | 202 | 1.55E-62 |