- Transcript 'Phmamm.CG.MTP2014.S8...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Clone 'man25d05' >
- Transcript 'Boleac.CG.SB_v3.S12....' >
- Transcript 'KH2012:KH.S816.2.v1....'
Transcript Model
Transcript Id
KH2012:KH.S816.2.v1.A.ND1-1
Possible name(s)
ZIC2; ZIC3; ZIC4
Gene model
Location
KhS816 [21,576 / 22,840]
Amino acid sequence
Length: 342
>KH.S816.2.v1.A.ND1-1
SASYNPGYEMIPHFAQSLESHLQGMHNSNSRENFHPVQYPTHSTLANPIACKWRNMKNGG
RSCDVIFHDMHELVNHVTRDHVGGMDQTDHTCYWEDCSRKCKGFKAKYKLVNHIRVHTGE
KPFVCPFPDCGKTFGRSENLKIHQRTHTGERPFPCKFPGCERRFANSSDRKKHSYMHNTE
KLYACKYEGCDRSYTHPSSLRKHIRMHESNGDVIDNSSIYSPTSSCGSVEDVAREQNSVK
NNSVQTYLPPRFTSSPIHAPLATYDASESLKQKFPPIEKQAKFTEDFINHGQGMTSSIPQ
LNLNTASTEDCYNNYYTPQISNETYKSSFSPVSFQLPTHFVA
Nucleotide sequence
Length: 1,091
>KH2012:KH.S816.2.v1.A.ND1-1
AAGTGCGTCATATAACCCAGGATATGAGATGATTCCTCATTTTGCTCAATCCTTGGAGTC
TCACCTTCAAGGAATGCACAATTCCAACAGTAGAGAGAATTTTCATCCAGTGCAATATCC
GACGCATTCGACTCTCGCCAATCCGATTGCTTGCAAGTGGAGAAATATGAAGAATGGCGG
TCGCTCGTGTGACGTCATATTTCACGATATGCACGAGTTGGTAAACCACGTGACACGGGA
TCACGTGGGTGGTATGGATCAAACCGACCACACTTGCTACTGGGAAGATTGTTCAAGAAA
ATGCAAAGGTTTTAAAGCGAAGTACAAATTGGTGAATCATATTCGAGTTCATACTGGGGA
GAAACCATTTGTTTGCCCTTTTCCTGATTGTGGAAAAACGTTTGGAAGAAGCGAGAATTT
AAAAATCCATCAAAGAACCCACACAGGTGAACGACCCTTTCCTTGTAAATTTCCCGGATG
TGAAAGACGGTTTGCAAACAGTTCCGATCGTAAGAAGCATAGTTATATGCACAACACTGA
AAAACTTTATGCGTGTAAGTACGAAGGTTGCGACCGAAGCTACACTCATCCCAGTTCACT
ACGTAAGCACATACGTATGCACGAATCCAATGGTGACGTAATCGACAACAGTTCCATTTA
TTCTCCCACGAGTTCGTGTGGTTCAGTAGAAGATGTAGCTCGAGAACAAAACTCCGTTAA
AAATAATTCCGTTCAAACATATTTACCTCCACGATTTACGTCATCGCCGATTCATGCACC
TTTAGCCACGTATGATGCTTCAGAAAGTTTAAAACAAAAGTTTCCCCCTATTGAGAAGCA
AGCTAAATTCACAGAAGATTTTATAAACCACGGACAAGGTATGACATCATCAATACCTCA
ATTAAACTTAAACACAGCTTCAACCGAAGATTGTTACAACAATTACTATACACCTCAAAT
ATCTAATGAAACTTATAAATCTTCCTTTTCTCCTGTGTCGTTTCAATTACCCACGCATTT
TGTCGCGTAAAATCTTTATTTGTTTGTTATATGCGTTACTTTATAACAAAATACAGTATA
TCTATGAAACA
| SMART |
Znf_C2H2_type (IPR013087) - T[49-81] 250.0 - T[90-117] 10.0 - T[123-147] 1.0E-4 - T[153-177] 0.044 - T[183-207] 1.8E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[95-122] 10.949 - T[123-152] 17.059 - T[153-182] 10.408 - T[183-212] 11.24 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[104-160] 4.03E-20 - T[164-208] 5.25E-10 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[125-147] . - T[155-177] . - T[185-207] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZIC4_HUMAN | 60.963 % | 241 | 5.43E-78 |
| ZIC2_HUMAN | 58.376 % | 238 | 1.69E-74 |
| ZIC3_HUMAN | 55.556 % | 244 | 2.51E-77 |