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- Transcript 'KH2012:KH.S816.4.v1....'
Transcript Model
Transcript Id
KH2012:KH.S816.4.v1.A.ND1-1
Possible name(s)
ZIC3; ZIC4; ZIC5
Gene model
Location
KhS816 [18,330 / 19,375]
Amino acid sequence
Length: 280
>KH.S816.4.v1.A.ND1-1
DVIFHDMHELVNHVTRDHVGGMDQTDHTCYWEDCSRKRKGFKAKYKLVNHIRVHTGEKPF
VCPFPDCGKTFGRSENLKIHHRTHTGERPFPCKFPGCERRFANSSDRKKHSYMHNTEKLY
ACKYEGCDRSYTHPSSLRKHIRMHESKGDVIDNGSIHSPTSSCGSVDDVAREQNSVENNS
VQAYLPPRFTSSPIHAPLAMYDASESLKQKFPLVEKQAKFTEHFINHGQDMTLSLPQKNL
NIALNKDCYNDYFLPQYSLSNSIKPAYLDGPSYLPSRVVA
Nucleotide sequence
Length: 871
>KH2012:KH.S816.4.v1.A.ND1-1
GACGTCATATTTCACGACATGCACGAGTTGGTAAACCACGTGACACGGGATCACGTGGGT
GGTATGGATCAAACCGACCACACTTGCTACTGGGAAGATTGTTCAAGAAAACGCAAAGGT
TTTAAAGCGAAGTACAAATTGGTGAATCATATTCGAGTTCATACTGGGGAGAAACCATTT
GTTTGCCCTTTTCCTGATTGTGGAAAAACGTTTGGAAGAAGCGAGAATTTAAAGATCCAT
CACAGAACACACACAGGTGAACGACCTTTTCCTTGCAAATTTCCCGGATGTGAAAGACGG
TTTGCAAACAGTTCCGATCGTAAGAAGCATAGTTACATGCACAACACTGAAAAACTTTAT
GCGTGTAAGTACGAAGGTTGCGACCGAAGCTACACTCATCCAAGTTCACTACGTAAGCAC
ATACGTATGCACGAATCCAAAGGTGACGTAATCGACAACGGTTCCATTCATTCTCCCACG
AGCTCGTGTGGTTCAGTAGATGATGTAGCTCGAGAACAAAACTCCGTTGAAAATAATTCC
GTTCAAGCATATTTACCTCCACGATTTACGTCATCACCGATTCATGCACCTTTAGCCATG
TATGATGCTTCAGAAAGTTTGAAACAAAAGTTTCCACTTGTTGAGAAGCAAGCTAAATTT
ACAGAACATTTTATAAATCACGGACAAGATATGACATTATCTCTACCTCAAAAAAATTTG
AACATAGCTTTAAATAAAGATTGTTACAACGATTATTTTTTACCCCAATACTCGCTTTCT
AATTCAATTAAACCTGCTTATCTAGATGGTCCTTCCTATTTACCTTCTCGTGTGGTCGCT
TAAATGTTCCGTTCTCGCATATGCCTTTATT
| SMART |
Znf_C2H2_type (IPR013087) - T[27-54] 6.0 - T[60-84] 2.8E-4 - T[90-114] 0.044 - T[120-144] 1.8E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[32-59] 11.281 - T[60-89] 16.747 - T[90-119] 10.408 - T[120-149] 11.406 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[41-97] 1.38E-19 - T[101-145] 3.07E-10 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[62-84] . - T[92-114] . - T[122-144] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZIC4_HUMAN | 64.881 % | 233 | 2.01E-75 |
| ZIC3_HUMAN | 58.673 % | 233 | 4.84E-74 |
| ZIC5_HUMAN | 72.34 % | 233 | 3.39E-72 |