- Transcript 'KH2012:KH.S899.5.v2....'
Transcript Model
Transcript Id
KH2012:KH.S899.5.v2.R.ND1-1
Possible name(s)
PRPF19; WDR27; WDR47
Gene model
Location
KhS899 [9,851 / 13,996]
Amino acid sequence
Length: 784
>KH.S899.5.v2.R.ND1-1
SEMLKIRKVWSFQNISNNSSKYDVTDTALAVSNDNDVTLWNLNEGLPDEGILLHGHHAQV
TTVTFSRHHGNDDVILATGASDYIIVWKLGEVLAAHNNGTLVRGHIFSSTSGESPNILRF
SPSTKYLCDVTDNELMVYDYDNTKIIFTEPCRDVSSIDFQSDTLVAVVTTTGRINIWDVA
QCCLVWQHTMVQGLSCLTANEYQLFVTSVSSKETFNLLARYFQIHGFVANPEPRLHFQKD
LDLCLLHHNWDGDVTKGIVLSLLCVESPHCDVTSRSSVTFVLCAMNRVIVAINCDNQEST
VMQYMDCDIIEPIVASQACLSQDPKTKKITCCVTSMLDPTTHVFHLTLPTPSNPLCNPTT
PTFVSAAPLADTSPLRGQIKFNKTATPTNDQPITFKHKVRSSGYKSSPRMSMFNPKTNKP
KKVTKTLKPERRETEPSDWSMLMTSQGEATCCSAPVSVRSIPVDETTKQFASLLNDNSVL
VMSLPLLASNNKTKHVTGASNTLGCSWSHGASWLGASRHGGWLLTHTKDTVAVWENPYTN
TAALRFSIFGDEDRKQRQTKEIVSSQFYYLDKFILLGCGNSLSLFKFHLEEKSGDEIKRY
LWKGRSKLVCSREATLGQNISSFSAANNYYSYIVLVGGSDRNINIYDFNVCKTIGIYENA
HSKPTHTIDIATGSSIVTSSNDLFMTSAFSDGIKLWDLRSTSSILKLNQHSNKTKSSSCV
TPCGKYIATTCDEKSVYLYDCRSFHPLQILKLKSKPTSVSFTPCSTQLLVGTDSSKVLGF
SVKK
Nucleotide sequence
Length: 2,417
>KH2012:KH.S899.5.v2.R.ND1-1
CAGCGAAATGTTGAAAATACGAAAAGTCTGGAGTTTTCAAAATATTTCGAATAATAGCTC
GAAATATGACGTCACAGACACCGCGTTGGCGGTTTCGAATGATAATGACGTCACACTGTG
GAATTTAAACGAGGGTTTGCCAGATGAGGGTATTTTATTACACGGCCATCACGCCCAAGT
TACCACGGTAACTTTCTCCCGTCACCATGGAAACGATGACGTCATACTTGCGACAGGAGC
ATCTGATTACATCATCGTGTGGAAGCTCGGGGAGGTTTTGGCGGCGCATAATAATGGAAC
TTTGGTCCGAGGCCACATCTTTAGTTCCACATCGGGGGAATCCCCCAATATTCTTCGATT
CTCCCCGAGCACAAAGTACCTTTGTGATGTCACAGACAACGAACTCATGGTTTATGATTA
TGACAACACAAAGATTATTTTCACGGAACCTTGCCGAGATGTTTCGTCGATAGATTTCCA
ATCTGACACTCTGGTTGCCGTGGTAACAACAACGGGGAGGATTAATATTTGGGATGTTGC
TCAATGTTGCCTCGTGTGGCAGCATACCATGGTGCAGGGGTTATCATGCCTGACAGCGAA
CGAGTATCAACTTTTCGTAACTTCTGTTTCCTCGAAGGAAACTTTCAATCTTCTTGCTCG
TTATTTCCAGATCCATGGATTTGTCGCGAACCCCGAACCTCGGCTTCACTTTCAGAAAGA
TCTCGATCTTTGTTTGTTACATCATAATTGGGATGGTGATGTAACAAAGGGGATTGTTTT
GTCATTATTATGCGTTGAATCACCTCATTGTGATGTCACAAGTCGATCAAGCGTAACGTT
CGTGTTGTGTGCGATGAACCGCGTCATCGTTGCGATTAATTGTGACAATCAGGAATCAAC
TGTGATGCAATATATGGATTGTGACATCATTGAACCCATTGTTGCATCACAAGCATGTTT
GTCACAGGATCCGAAAACAAAGAAGATAACGTGCTGCGTCACCTCAATGTTGGACCCCAC
CACCCATGTATTCCACCTAACCCTGCCAACCCCCAGTAACCCCCTTTGTAACCCCACAAC
CCCCACTTTCGTATCCGCCGCTCCACTGGCTGACACATCACCCCTTAGGGGTCAAATAAA
GTTCAACAAAACTGCCACGCCCACAAATGACCAACCAATCACCTTCAAACACAAAGTCAG
AAGTTCCGGCTACAAATCTTCCCCAAGGATGTCTATGTTCAACCCTAAAACCAACAAGCC
AAAAAAAGTTACGAAAACGTTGAAGCCGGAACGTCGGGAAACGGAGCCATCTGATTGGTC
GATGTTGATGACATCACAAGGGGAGGCGACGTGTTGTTCCGCACCAGTGAGCGTTCGTTC
GATCCCAGTTGATGAAACAACAAAGCAGTTTGCCTCGCTGTTGAACGATAATAGTGTCCT
AGTAATGTCACTCCCACTGCTAGCATCTAACAACAAAACGAAACATGTGACAGGGGCGAG
CAATACATTAGGATGTTCGTGGTCACATGGGGCAAGTTGGCTCGGGGCAAGTCGGCACGG
GGGTTGGTTACTTACGCATACTAAGGATACTGTGGCTGTGTGGGAAAACCCCTATACCAA
TACAGCTGCTTTGAGGTTTTCCATATTTGGTGACGAGGATAGAAAGCAACGTCAAACAAA
GGAAATTGTTTCGTCACAATTTTATTATTTGGATAAATTTATTTTGCTTGGTTGCGGAAA
TTCCTTGTCTTTGTTTAAATTTCATCTGGAGGAAAAGAGTGGAGATGAAATCAAAAGATA
TTTATGGAAAGGTAGATCCAAGTTGGTTTGTTCGCGAGAAGCAACGTTGGGGCAAAACAT
TTCAAGTTTTTCTGCGGCAAATAATTATTATTCATACATCGTGTTGGTTGGAGGATCGGA
TCGAAACATTAATATATATGATTTCAATGTTTGTAAAACCATTGGTATTTACGAGAATGC
TCACAGCAAACCAACGCATACTATCGACATTGCTACGGGTTCATCTATTGTGACATCATC
AAATGATTTGTTTATGACATCAGCATTTTCTGACGGAATCAAACTTTGGGATTTACGATC
GACAAGTTCGATTCTTAAATTGAACCAACATTCGAACAAAACAAAGAGTAGCTCATGTGT
GACACCTTGTGGAAAGTATATTGCAACAACTTGCGACGAGAAATCGGTTTACCTTTACGA
TTGCAGAAGTTTCCACCCACTTCAAATATTAAAATTAAAATCCAAACCGACGAGTGTCAG
TTTCACCCCGTGTTCAACACAGTTGTTGGTCGGAACAGATTCGTCAAAAGTTTTGGGTTT
TTCTGTCAAAAAGTGAACTATTATGACATCACAGTAACTTTGTGTTTAATTGTTTTTAAT
TAAATTATTTTCAAGTA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[2-222] 5.6E-14 - T[407-784] 1.7E-18 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[29-97] 8.94 - T[615-749] 9.415 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[32-200] 3.48E-23 - T[449-682] 3.48E-7 - T[629-782] 3.48E-23 |
| SMART |
WD40_repeat (IPR001680) - T[46-88] 4.7 - T[140-178] 3.5 - T[605-647] 22.0 - T[661-697] 6.5 - T[700-740] 1.4 - T[743-781] 31.0 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR27_HUMAN | 24.286 % | 199 | 1.44E-53 |