Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.S966.3.v1.A.nonSL4-1

Possible name(s)

VIPAS39

Gene model

KH2012:KH.S966.3

Location

KhS966 [11,458 / 14,469]

Sequences

Amino acid sequence

Length: 499

>KH.S966.3.v1.A.nonSL4-1
MASARKKTTATVSDEVYWNSSVLSPFNFNDDEENEDSIDVITWDGTNTSVSSKSQPNIKS
QPTASVHGTQATAPVHGTHVTSARYTPRKAYNSTTTKLDQPRPTPDTRSITDVVNDKKNS
PTTTDIVKLESEVATLRRQLTQAKRDRAVAPSKSDTLRRIMVGEACLLELYKSKEDKCSL
LDAAIERFDGNAIVAATLFMRDTLKRDLFSKELMRRGAAVDHYCAYLRAAGEVDELHETL
SAIGLTEEAAVLKYRQCLTNTSSTTPEIRASGLKDCIKYYFDSDIRLANETSAIQEQISL
MRRQSVVDDGDKASQASGQVPVFKSHPRKECITHKSVVTTLYYFCYYHWGEAEGLLSSPT
SLRNEHKIAEKQFVFTAIAALCKMRRWRDLENLLTTPRTLFRNSRLHANIGFDKVVDVLS
KNLAPPDALAKYCAEVESVDKRLELSVRLKCHKVAIDTIIHLRDRQQLMSYLDQIPQSNQ
HMRQYLTNNVRSQEIKWRN

Nucleotide sequence

Length: 1,761

>KH2012:KH.S966.3.v1.A.nonSL4-1
GTTGTTGTGAAAATTTAAAGTTGGTTGTTGAATTAAATGGCTTCGGCGAGGAAAAAGACG
ACAGCAACAGTTAGCGATGAAGTTTATTGGAACAGCAGTGTTTTGTCTCCGTTTAATTTC
AACGACGATGAAGAGAATGAAGATAGCATCGATGTTATAACATGGGATGGAACGAACACT
TCTGTTAGCTCCAAGTCACAACCCAATATTAAAAGCCAACCAACGGCCTCGGTTCATGGC
ACACAGGCTACGGCACCAGTCCATGGCACGCATGTCACATCAGCGCGGTACACACCACGT
AAAGCTTACAACTCAACGACAACGAAACTCGACCAACCACGACCAACGCCGGATACTCGT
TCAATTACGGATGTTGTAAACGACAAGAAGAACAGCCCAACGACAACGGACATCGTTAAA
CTTGAGTCGGAGGTTGCAACTTTGCGGCGACAATTGACACAAGCAAAACGTGATCGTGCC
GTGGCGCCTTCAAAGTCGGACACTTTACGCAGAATAATGGTTGGTGAAGCTTGTTTATTG
GAGTTGTACAAATCCAAGGAGGATAAATGTTCGTTACTCGATGCTGCCATTGAGCGTTTT
GATGGGAACGCGATTGTTGCTGCCACGTTGTTTATGAGAGACACTTTAAAAAGAGATTTA
TTTAGCAAGGAATTAATGCGTCGAGGTGCAGCGGTGGATCACTACTGCGCTTATCTACGA
GCAGCTGGGGAAGTTGATGAATTGCACGAAACATTGAGCGCTATCGGGCTCACAGAGGAA
GCTGCCGTGTTAAAGTATCGCCAATGTTTAACCAATACGTCGTCAACCACACCTGAGATT
CGTGCATCAGGTCTCAAGGACTGCATCAAATATTATTTTGACTCTGACATCCGGTTGGCA
AACGAAACGTCTGCAATTCAGGAACAAATCTCGTTAATGCGACGACAATCTGTTGTTGAT
GATGGGGACAAAGCATCACAAGCTAGTGGTCAAGTACCCGTGTTCAAGTCCCACCCAAGA
AAGGAATGCATCACCCATAAATCTGTCGTCACAACTTTGTATTACTTCTGTTACTACCAC
TGGGGTGAAGCAGAGGGTTTACTGAGCAGTCCAACTTCATTGAGGAACGAACACAAAATC
GCGGAAAAACAATTTGTTTTCACAGCGATCGCTGCGCTTTGTAAAATGAGAAGGTGGAGG
GATTTGGAAAACCTTCTTACGACGCCGCGAACGTTGTTCAGGAATTCTCGGCTTCACGCG
AACATTGGGTTTGATAAAGTGGTTGACGTGTTGAGCAAGAACCTTGCGCCCCCTGATGCG
TTGGCGAAATATTGTGCTGAGGTTGAAAGCGTGGACAAGAGGTTGGAGCTGTCGGTTCGA
TTAAAATGTCACAAAGTTGCGATTGATACAATTATTCATCTACGAGATCGACAACAACTT
ATGTCGTATTTGGATCAAATTCCACAATCCAACCAACATATGCGGCAATATCTGACCAAC
AATGTTAGGTCACAGGAAATTAAATGGAGAAACTGAGAAGTGTTCGTGCAATAAAACTTT
AAAAAAAAGAATTTTATTCGAATTTTTTGGGGCGGCTTTTGTATCCTTGCATTCATTCAA
TAAAAACGTGATTGAATTTCCAAGCAGCAGCAAACGTGATGTATATTACCGCAGTCAGTT
TGCCCATGCAGGCATGTTTGTTTTAAACTCCCAATCTGGCCCTTTGTAACTGAGCGCATG
CAAATAAATAAACAAGGATTG

InterProScan

Gene3D	Vps16_C_sf (IPR038132) - T[165-452] 1.1E-13
Pfam	Vps16_C (IPR006925) - T[361-482] 9.9E-6

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SPE39_HUMAN	30.845 %	235	1.6E-71