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  1. Transcript 'KH2012:KH.C10.198.v1...'

Transcript Model

Transcript Id

KH2012:KH.C10.198.v1.A.ND1-1

Possible name(s)

CDH11; CDH7; PCDH1

Location

KhC10 [4,129,036 / 4,133,246]

Sequences

Amino acid sequence

Length: 423

>KH.C10.198.v1.A.ND1-1
TTMLFYSVAGILLYCYYTLGDFPHYKVSEGQFAYPKLITTISFPEEAVTSCTLDTVNFPD
RVRTAIRPLLFGVRIPQITPQRHQRHNDHIIRSVRSVSNATESVTAKYLDTTSRHVVTSS
PNISSTPAYTTAQRTEITTFIPSAVNSPSIIIHTTGKPAPIVTVHIVQLYDLDRETQDQY
LLTLHCVNRSGVEVEFPRLLIIDVTDINDNTPKFITSSLSSVVSTKVDVFDAVMDVKATD
ADIGINAAMRFSSIAGTERWKFPNSTSPVHATSACIAMLSSGQVVLLNRLTRDMVITFKV
VVKDMGSRPNGNRATATATVSVYSKLPVTTTSQPSLPSTEPAAISLKTWEIVAISVGVGV
CVLSAVAIFLIRLKRKRRIPQLTLSTREDGETFKLDFVSFKLVGGNVLLLAEILVDSELS
FIS

Nucleotide sequence

Length: 2,241

>KH2012:KH.C10.198.v1.A.ND1-1
GCTTGAGGGTAAACACAAGAGTTTGCGTGAACCGAGTCTTACATACGACGTTCGAAAGGA
ATGAACTCTTGTCTGTTATAAATCGAAGTATAATTTATGTCTGGCGTTAATCGTTAACAA
CTTTTACTTTATTGGCGTTTACGGGCGCATATACTCTAACGAAAAACTCTGTGTCTAAAT
TAAAAGTACAGAATGGCATTACGTATTGACTAAGTGAAAAAAGAAAACGATTTAAGACTT
TATTGAAGGCAGCATCGTATAGCGCGTGTGATTTCCGCGTTGGTTACTAACTTCTACTCT
AGTATTACTATTATATAATGGACCTAGCCAAAAGCATGATGTGTGTAACACTCTGCCAGG
AAGTGAGTATGTGCCCAACACAGTGCAGTTATACAGTAAAAGTTAAACCAAACGCGTAAA
TAATATAAGTTCGCTGTGCAGTAGTTGAAAACGTTAAAAGACGGGTTTTGTAATTTGTGA
ACAACTATGCTTTTCTACAGCGTTGCTGGGATACTACTTTACTGCTACTATACTTTAGGG
GATTTTCCACACTATAAAGTGTCAGAAGGACAATTCGCTTATCCGAAATTAATTACCACG
ATTTCGTTCCCTGAAGAAGCTGTCACGTCCTGCACATTAGACACGGTCAATTTCCCTGAT
AGAGTGAGAACTGCTATACGGCCTCTGCTGTTCGGTGTACGAATCCCACAGATTACACCA
CAACGCCACCAAAGGCACAATGATCACATTATCCGATCTGTTCGATCCGTCTCCAATGCA
ACGGAATCAGTGACAGCAAAATACTTGGATACTACGAGCAGACATGTGGTCACCTCTAGC
CCAAATATTTCGAGCACGCCTGCTTACACCACAGCACAAAGAACTGAGATTACCACATTT
ATACCGTCGGCGGTTAATTCGCCCAGCATTATTATACATACGACAGGAAAACCGGCGCCT
ATAGTCACTGTACATATTGTACAGTTGTATGATTTGGATCGGGAAACACAAGACCAATAT
TTACTCACGTTACATTGCGTCAATAGAAGTGGTGTTGAGGTCGAATTTCCGCGTCTTCTT
ATCATTGACGTCACGGATATAAACGACAACACTCCAAAATTTATAACTTCGTCTCTTTCG
AGTGTTGTCTCAACCAAAGTTGACGTTTTCGATGCAGTAATGGACGTCAAAGCAACGGAC
GCAGATATCGGAATAAACGCAGCAATGCGGTTCTCGTCAATCGCAGGCACTGAAAGATGG
AAATTTCCGAATTCAACATCACCCGTCCACGCCACTTCTGCGTGCATAGCGATGCTATCT
TCCGGCCAAGTTGTGCTTCTGAATAGACTTACTCGTGACATGGTCATCACTTTTAAAGTG
GTGGTGAAGGACATGGGGTCCAGACCGAACGGTAACCGAGCCACCGCAACAGCAACGGTT
TCTGTATATTCCAAACTACCAGTTACCACAACTTCCCAACCTTCTCTGCCTAGCACCGAG
CCTGCCGCAATCTCTTTAAAAACGTGGGAGATAGTGGCAATCTCCGTGGGTGTGGGTGTT
TGTGTTCTATCTGCGGTTGCCATTTTTCTCATTCGTTTGAAACGAAAGAGACGAATACCT
CAGCTGACTTTATCGACAAGAGAAGACGGTGAGACCTTTAAGCTGGATTTTGTTTCATTT
AAATTAGTAGGCGGAAATGTTTTATTATTGGCAGAGATTCTTGTGGATAGTGAACTGTCG
TTTATTTCCTGATTTCTCGAGCGCCGAAGTGTAAACTGAGCAAAGAAATTTAAATTGCAA
GCTTTAAAGAGCGTCCGGGAGACATTGAAAAACAAGAAGGTGGTTTAAAGAACAGAAAAG
CAGCTTGTGTTTGCCGGAATACCAAGATTGACGCTTGGACCTTGAATTATGTTTTTTTAT
GAACGATGTTGAACATTTATGGACCATAGCAATACTTTTTTTTAAAGAGAAACGCTTCAG
GATTTTTCGTGTCATTCTTTTACTCCTGTGAAAGAATGCTGTTTTAATATGCCAGTCACA
GCTGCCAGAAGGGCGTGTTTCATATTTAAAGTTCACCCGAATTAATGTAACTTTAACCCA
CAGCAGTTTAGTGCAGTCTTTTTTTTGTTATTTGACACTGTGTTCTTAAACATATCTCTG
TTTCTATATTTATTCAGTTTGTATATTATTTATCTCGCGTCACACGATCCTAATAAAATA
ATAAAAAGATTCGAACAGCGC

InterProScan

SUPERFAMILY
Cadherin-like (IPR015919) - T[165-214] 4.43E-6 - T[202-320] 1.57E-9
ProSitePatterns
Cadherin_CS (IPR020894) - T[202-212] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value