Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C10.239.v1.A.ND2-1

Possible name(s)

RPS27A; UBB; UBC

Gene model

KH2012:KH.C10.239

Location

KhC10 [828,227 / 830,160]

Sequences

Amino acid sequence

Length: 158

>KH.C10.239.v1.A.ND2-1
KTIMQIFVKTLTGKTITLEVEASDSIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS
DYNIQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKRVKVKLATLKYYKVDENGKISRL
RRECPNTECGAGVFMASHFDRQYCGKCALTYVFKPENQ

Nucleotide sequence

Length: 799

>KH2012:KH.C10.239.v1.A.ND2-1
GTTTAGCTGTAAATTATTTAAAAAAAAATGAAAATTAAGAAACGCTTAAAAATTATTTTA
GAAAAAAACTAGTAGTATTTTCTAGTTTGGCAACACTTTTATGGAAACGAGGTTTTTCTT
GACACGAGATCTCTCTCTTTCGCGCATGCTTCGAAGTCGGTAAAAAACCATAATGCAGAT
CTTTGTCAAAACCCTTACGGGCAAAACCATCACCCTTGAGGTTGAAGCATCGGACTCCAT
TGACAATGTGAAAGCAAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAACAAAGATT
GATCTTCGCTGGCAAGCAACTTGAAGATGGACGAACTTTGAGTGATTACAACATCCAGAA
AGAATCCACTCTTCACCTTGTGCTTAGATTGAGAGGAGGTGGTAAGAAGAGAAAGAAGAA
GACTTACACCACTCCAAAGAAAATCAAGCATAAGCGTGTCAAAGTCAAGCTTGCAACTCT
TAAATACTACAAGGTTGATGAAAATGGCAAGATCTCCCGTTTGAGACGTGAATGTCCCAA
CACTGAATGTGGTGCTGGAGTTTTCATGGCTTCCCACTTTGATCGTCAATATTGCGGCAA
ATGTGCCCTCACATACGTGTTCAAACCTGAGAACCAGTAATGAAATAAAACCCGTTTCAC
ATTAGTTGCTCTCTTCTTTACCAGACAGCTTTCGCCTCTTTGTATATGCAATGATGAAAT
AGGTTGTGGGTTGAAATATATGCTGTTCGCAGCCTAAATGATTCCACACGCCATCCTCTG
AGCATATTTTATTAAAAAG

InterProScan

SMART	Ubiquitin_dom (IPR000626) - T[4-75] 2.0E-34
ProSiteProfiles	Ubiquitin_dom (IPR000626) - T[4-79] 30.213
SUPERFAMILY	Ubiquitin-like_domsf (IPR029071) - T[4-96] 1.1E-34
Pfam	Ubiquitin_dom (IPR000626) - T[6-77] 3.8E-33
PRINTS	Ubiquitin (IPR019956) - T[14-34] 2.8E-38 - T[35-55] 2.8E-38 - T[56-77] 2.8E-38
ProSitePatterns	Ubiquitin_CS (IPR019954) - T[30-55] .
Gene3D	S27a-like_sf (IPR038582) - T[84-158] 7.9E-41
SUPERFAMILY	Ribosomal_zn-bd (IPR011332) - T[103-156] 1.1E-20
SMART	Ribosomal_S27a (IPR002906) - T[105-150] 2.4E-28
Pfam	Ribosomal_S27a (IPR002906) - T[106-150] 3.6E-27

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RL40_HUMAN	96.053 %	150	1.44E-47
RS27A_HUMAN	89.744 %	256	3.65E-89
UBB_HUMAN	96.053 %	150	2.96E-46