- Transcript 'KH2012:KH.C10.239.v1...'
Transcript Model
Transcript Id
KH2012:KH.C10.239.v1.A.nonSL1-1
Possible name(s)
RPS27A; UBB; UBC
Gene model
Location
KhC10 [828,363 / 830,160]
Amino acid sequence
Length: 158
>KH.C10.239.v1.A.nonSL1-1
KTIMQIFVKTLTGKTITLEVEASDSIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS
DYNIQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKRVKVKLATLKYYKVDENGKISRL
RRECPNTECGAGVFMASHFDRQYCGKCALTYVFKPENQ
Nucleotide sequence
Length: 663
>KH2012:KH.C10.239.v1.A.nonSL1-1
CTTTCGCGCATGCTTCGAAGTCGGTAAAAAACCATAATGCAGATCTTTGTCAAAACCCTT
ACGGGCAAAACCATCACCCTTGAGGTTGAAGCATCGGACTCCATTGACAATGTGAAAGCA
AAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAACAAAGATTGATCTTCGCTGGCAAG
CAACTTGAAGATGGACGAACTTTGAGTGATTACAACATCCAGAAAGAATCCACTCTTCAC
CTTGTGCTTAGATTGAGAGGAGGTGGTAAGAAGAGAAAGAAGAAGACTTACACCACTCCA
AAGAAAATCAAGCATAAGCGTGTCAAAGTCAAGCTTGCAACTCTTAAATACTACAAGGTT
GATGAAAATGGCAAGATCTCCCGTTTGAGACGTGAATGTCCCAACACTGAATGTGGTGCT
GGAGTTTTCATGGCTTCCCACTTTGATCGTCAATATTGCGGCAAATGTGCCCTCACATAC
GTGTTCAAACCTGAGAACCAGTAATGAAATAAAACCCGTTTCACATTAGTTGCTCTCTTC
TTTACCAGACAGCTTTCGCCTCTTTGTATATGCAATGATGAAATAGGTTGTGGGTTGAAA
TATATGCTGTTCGCAGCCTAAATGATTCCACACGCCATCCTCTGAGCATATTTTATTAAA
AAG
| SMART |
Ubiquitin_dom (IPR000626) - T[4-75] 2.0E-34 |
| ProSiteProfiles |
Ubiquitin_dom (IPR000626) - T[4-79] 30.213 |
| SUPERFAMILY |
Ubiquitin-like_domsf (IPR029071) - T[4-96] 1.1E-34 |
| Pfam |
Ubiquitin_dom (IPR000626) - T[6-77] 3.8E-33 |
| PRINTS |
Ubiquitin (IPR019956) - T[14-34] 2.8E-38 - T[35-55] 2.8E-38 - T[56-77] 2.8E-38 |
| ProSitePatterns |
Ubiquitin_CS (IPR019954) - T[30-55] . |
| Gene3D |
S27a-like_sf (IPR038582) - T[84-158] 7.9E-41 |
| SUPERFAMILY |
Ribosomal_zn-bd (IPR011332) - T[103-156] 1.1E-20 |
| SMART |
Ribosomal_S27a (IPR002906) - T[105-150] 2.4E-28 |
| Pfam |
Ribosomal_S27a (IPR002906) - T[106-150] 3.6E-27 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RL40_HUMAN | 96.053 % | 150 | 1.44E-47 |
| RS27A_HUMAN | 89.744 % | 256 | 3.65E-89 |
| UBB_HUMAN | 96.053 % | 150 | 2.96E-46 |