- Transcript 'KH2012:KH.C10.587.v1...' >
- Clone 'citb5d22' >
- Transcript 'KH2012:KH.C1.1029.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1029.v1.A.SL1-1
Possible name(s)
DDX1; DDX17; DDX5
Gene model
Location
KhC1 [8,517,574 / 8,530,199]
Amino acid sequence
Length: 744
>KH.C1.1029.v1.A.SL1-1
IRIMTAFENLGVMPEIGKMIMEIGWLLPTDIQAESIPLILGGGDVLMAAETGSGKTAAFS
IPVIQIVHETLSSTRGGGGMKGGNALPAIFNTWQMNPYDRGNAFAISSDGLLCQSREVRE
WHGCRSTRGVTKGKYYYEVLCKDEGLNRVGWSTLSADLNLGTDKDGYGFGGTGKKSNSRQ
FNTYGEPFTMHDIIGCFLDMDEGRIKYSKNGIDLGHAFDIPGFLRKQPMFAACVLKNSEL
SFNFGGEPFKFPPSGQFVALSKAGDQSSVTSAKTGSAVVKKQNTKRSNNSPYAIIIEPSR
ELAEQTAKIIRDLKKFVQNPTVSEVLVVGGVPASDQLKLIQQGVDILIGTPGRVDDFIST
GKIDLSQVRFLVLDECDGLLTAGSGGFIKRTHSHIPQVTSDGKRLQVIVCSATLHSFDVK
RLANEIMHFPVWVDLKGEDSVPETVHHVVVPVDPIRDPSWMGLRNHVPTDAVHKRDNVDS
RAKETKEKWSEGIKILKGEYCVRAIRDHKMEQAIIFCRTKLDCDNLERYFKQVGGHDDQL
SCVCLHSDRKPHERRGNLEKFKNRKVRHLICTDVAARGIDIRGVPFVINMTLPDDKQNYV
HRIGRVGRAERMGLAISLVATKHKEKVWYHSNCNNKGRGCFNTNLTDFGGCCIWYDENGL
LGDIESHLKITIEQTTPKMEIPVDEFDGKVVYGSKRSKSNISKYKDHTDILAPSVKELQA
LERSTQTSFLQMRMNMSRILKGKS
Nucleotide sequence
Length: 3,278
>KH2012:KH.C1.1029.v1.A.SL1-1
CATACCAGAGGTTTTGCTTCTAAATTAGAATCATGACTGCGTTTGAAAACTTGGGGGTGA
TGCCTGAGATTGGGAAGATGATAATGGAGATTGGTTGGCTACTTCCAACTGATATACAAG
CAGAGTCGATCCCTTTGATCCTGGGAGGCGGGGATGTCCTTATGGCTGCGGAGACTGGGT
CAGGGAAGACGGCAGCTTTCAGTATCCCTGTTATACAGATCGTGCATGAAACGCTATCGA
GTACAAGGGGTGGTGGAGGTATGAAGGGTGGCAATGCATTGCCTGCTATCTTCAACACCT
GGCAGATGAACCCATACGACAGAGGAAACGCATTTGCGATTAGTTCTGATGGTTTGTTGT
GTCAGTCAAGGGAGGTGAGGGAATGGCATGGATGTAGGTCAACCAGGGGAGTTACTAAGG
GCAAGTATTATTATGAGGTATTATGCAAGGATGAAGGTTTAAACAGAGTAGGTTGGTCAA
CACTGTCAGCAGATTTAAACCTTGGTACTGATAAGGATGGATATGGCTTTGGGGGAACGG
GGAAAAAATCCAACAGTCGTCAGTTTAACACGTACGGTGAACCTTTCACAATGCATGATA
TCATTGGCTGTTTCTTAGATATGGATGAAGGTAGAATCAAATACTCCAAAAACGGCATCG
ACCTCGGCCATGCGTTTGACATACCTGGTTTCCTAAGAAAACAACCAATGTTTGCCGCTT
GTGTTTTAAAGAACTCCGAACTTAGTTTCAACTTTGGTGGTGAGCCGTTTAAATTCCCAC
CTAGTGGCCAGTTTGTCGCACTTTCAAAGGCCGGCGACCAATCAAGCGTAACAAGCGCTA
AAACTGGATCCGCTGTCGTTAAGAAGCAAAACACAAAGAGATCCAACAACTCTCCTTATG
CGATCATAATTGAGCCTTCCCGTGAGCTGGCGGAACAAACGGCAAAAATTATTAGAGATT
TAAAAAAATTCGTTCAAAATCCAACTGTGTCTGAAGTCCTCGTGGTGGGTGGTGTGCCTG
CAAGTGACCAGTTAAAGTTGATTCAACAAGGAGTTGATATTTTAATTGGGACGCCGGGTC
GAGTGGATGATTTTATCTCAACTGGAAAGATCGATTTAAGCCAAGTAAGGTTCCTTGTAC
TCGACGAATGCGATGGATTATTAACAGCTGGTAGCGGGGGGTTTATCAAACGAACACATT
CCCATATACCACAGGTAACATCTGATGGGAAACGTCTCCAAGTTATCGTATGTTCGGCTA
CTTTGCATAGCTTCGATGTTAAAAGGCTTGCTAATGAGATCATGCATTTCCCTGTGTGGG
TGGATTTGAAGGGTGAAGACTCAGTACCTGAGACCGTCCACCATGTTGTTGTTCCCGTGG
ATCCCATAAGGGACCCTAGTTGGATGGGGTTGCGCAATCATGTACCGACCGACGCCGTGC
ATAAGAGAGATAACGTTGACAGCAGAGCTAAGGAAACTAAGGAGAAATGGTCGGAAGGGA
TCAAAATATTGAAAGGCGAGTATTGTGTTCGTGCGATACGCGACCACAAAATGGAGCAAG
CGATCATATTCTGCCGAACGAAACTCGATTGCGACAACCTTGAACGATATTTCAAACAAG
TTGGTGGTCACGATGACCAACTATCGTGCGTGTGTCTGCATAGTGATCGGAAACCTCATG
AAAGGAGAGGGAATTTGGAGAAGTTTAAAAATCGGAAGGTGCGACACTTGATATGTACAG
ACGTAGCAGCGCGTGGCATCGACATACGAGGCGTTCCATTCGTTATAAACATGACGCTAC
CTGATGATAAACAGAACTATGTCCATCGCATTGGGAGGGTGGGGAGAGCTGAGAGGATGG
GGCTGGCTATCTCGCTAGTGGCTACTAAGCACAAGGAGAAGGTCTGGTATCACAGCAATT
GCAATAATAAGGGCAGAGGTTGCTTCAATACAAACCTCACTGATTTTGGTGGTTGTTGTA
TTTGGTACGATGAGAACGGCTTACTCGGGGACATTGAATCTCATCTGAAAATAACAATCG
AACAAACAACCCCCAAAATGGAAATCCCCGTTGATGAGTTTGATGGGAAGGTTGTATACG
GCAGCAAGAGATCAAAGTCCAACATCTCCAAATACAAGGATCACACTGACATACTGGCAC
CTAGTGTAAAGGAACTACAAGCGTTAGAGCGATCTACACAAACCTCATTTTTACAAATGA
GGATGAATATGTCAAGAATATTAAAAGGAAAATCATAATGTGTTGCATTCGTGGTTTAGT
TATTTTTGAAGCTAATTAGAGTGAAATATTTTTCAATTTTTTTGGAAATATTAAAAAGTT
GGCGATTGTTTTGGTTTTGCTGCATTCGTGTCTTAGTTAATATTAACTAATTTTGAATTG
GTAACATTTTTTTAGAAACATTCTTGTTTAAATTCTTATAAGTTAGCAATTGTGTATGAA
GGATATAAGTGTGAAACATGGGGTGGAGTTTGCACCCAACACCCTGTACTTTATCTCATG
GTGTGGAGTTTACACCCAATTCAATGGTCAATACCATTTACATTTGTTTAACTTTCATTC
TATTAACAATTGTAATGAATCCATCATTTCAATGTTTGCTGTGTAAACAGAACATCCGCG
TAACCCCTTTCTTCCTAAATGGCAAATATTTGCCTTTTTCTTTGTTTGCTCTGCCACCTA
ACTCTTGCAGTTGCATAAGTGATGTGATCGCTGTTGTTGTTCTGTATGGTGTAGGCTAGC
TAGTTTATAAGTAGCAGATTCATAAGCGTGGGTATTGTAAAACTATCCTAGATTTTTTGG
TGCTAACTAATTTACTAGATAAATAATAGCAAGCAATTCAGTTGTTCATGTTATATATCT
GTTCTAAAAATTATTCTTTAAATAATAAATAAAACTCTTTTTTTTAATTTTGTTAAAATA
TCATTTGCCTTTGGTTGTTCTATTTAGCATGAGCCTGGGGTTTGGGCCAGAGTTGGCTGA
TGAACCAAATGTTCTATTCTATATGGGTGTTGGGTTCTGTATTATTATCATCCTCCCCTT
TGTATGTTGCCACCATTTTCTGTTACCTAATACTGTTCAAAATAATTTCTTTTTTTCAAG
AAAACTACATTTTTTACTTTAAATCGTACTAGAAGTAAACGATGTATCTTACTAGTACAA
CAATATATTATCTCTATCTTATTTGCAATTGCAATAATTCTGTTATTCGAAGAATATTAT
TTTCTGGTGAAACTGATGTTACACTGTTTCTATTTCAG
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[4-70] 4.11E-16 - T[290-456] 5.11E-54 - T[497-628] 5.11E-54 |
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[5-33] 8.762 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[24-448] 7.7E-44 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[29-422] 4.6E-62 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[36-78] 7.089 - T[259-432] 19.557 |
| ProSiteProfiles |
B30.2/SPRY (IPR001870) - T[72-249] 16.779 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[90-252] 5.54E-37 |
| SMART |
SPRY_dom (IPR003877) - T[132-248] 3.0E-27 |
| Pfam |
SPRY_dom (IPR003877) - T[134-246] 1.2E-19 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[477-684] 18.496 |
| CDD |
Helicase_C (IPR001650) - T[497-618] 3.22164E-29 |
| Pfam |
Helicase_C (IPR001650) - T[499-609] 1.2E-24 |
| SMART |
Helicase_C (IPR001650) - T[524-610] 1.0E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX1_HUMAN | 66.35 % | 944 | 0 |
| DDX17_HUMAN | 27.901 % | 136 | 2.94E-33 |
| DDX5_HUMAN | 25.606 % | 135 | 3.27E-33 |