Aniseed - Transcript Card

Transcript 'KH2012:KH.C11.205.v1...'

Transcript Model

Transcript Id

KH2012:KH.C11.205.v1.A.SL2-1

Possible name(s)

ARHGEF7; LASP1; PEX13

Gene model

KH2012:KH.C11.205

Location

KhC11 [2,608,999 / 2,612,310]

Sequences

Amino acid sequence

Length: 389

>KH.C11.205.v1.A.SL2-1
FKMAANGAPPKPWEINRGQSPSNNLRSSSLTRPESGEFPTPPPIPARPNQQSTSATMYRP
TYGNLGSYGGGYNFGGYGGYGSGMYGSSGLYGTGGGMYGSSYRNYGTPPNGVGSFTQQAE
DSTRQAFQSVESIVRAFTSVSAMLESTFGAVYSSFRAVLDVADHFSRVRSTFSEILSSIA
IFRLFRYLYRRVLAIFGSRECEDAWSNAAVDGALMRPNSSSQKKSWPIMLFAAVVMGGPY
LIWRLMRGANSQKPANISWMNGDGDHVVAKAEFDFSSESEEEISFLAGDTIILAPRAQQP
HIRGWLLGTIDGKNPGYLPANYVKILGLRRGRAKPTTPPTPAANISTTTTTTPPAGLSTE
GTVSNEEWQNIHSGSERLGPPEEPPTQQS

Nucleotide sequence

Length: 1,650

>KH2012:KH.C11.205.v1.A.SL2-1
CTTAACCCAAGTAATTCAAAATGGCTGCTAATGGGGCTCCCCCTAAACCCTGGGAGATAA
ACAGGGGTCAATCACCCAGCAATAACCTTCGTTCTTCGTCCCTTACCCGCCCTGAATCCG
GGGAATTCCCTACTCCACCCCCAATACCCGCCCGACCGAATCAACAGAGCACATCAGCTA
CAATGTACAGACCAACTTATGGCAACCTTGGTTCATATGGGGGCGGCTATAACTTTGGTG
GTTATGGGGGCTATGGCAGTGGTATGTATGGCAGTAGTGGTTTGTATGGCACTGGGGGAG
GTATGTATGGTTCGTCATATCGTAACTATGGCACCCCACCCAACGGAGTTGGTAGTTTCA
CTCAGCAAGCAGAAGACAGCACACGACAGGCATTTCAATCCGTTGAATCAATTGTTAGAG
CTTTTACTTCTGTGTCAGCCATGTTAGAATCTACATTTGGAGCAGTATACAGTTCCTTTC
GTGCTGTACTTGATGTAGCTGACCACTTTTCGAGAGTGCGTTCTACATTTTCAGAGATTC
TCTCTTCAATAGCAATATTCAGATTGTTCCGTTACTTGTATCGAAGAGTGTTGGCTATAT
TCGGCTCACGAGAATGTGAAGATGCTTGGTCAAATGCAGCTGTAGATGGAGCGCTTATGA
GACCAAATTCGTCATCACAAAAAAAATCTTGGCCAATCATGTTGTTTGCTGCAGTGGTAA
TGGGAGGTCCTTATCTAATATGGAGACTGATGAGGGGAGCTAACTCGCAAAAACCTGCCA
ATATTTCGTGGATGAACGGAGACGGCGATCATGTGGTTGCTAAAGCAGAGTTTGATTTTA
GCAGCGAGAGTGAAGAGGAAATCTCGTTTCTTGCAGGAGATACCATCATCCTTGCACCAA
GAGCTCAACAACCCCACATAAGAGGTTGGTTACTCGGAACGATAGATGGGAAAAATCCAG
GCTACCTTCCCGCAAATTATGTTAAAATTCTCGGTCTGCGACGAGGGCGTGCAAAACCAA
CCACACCACCTACACCAGCTGCCAATATAAGCACAACAACTACCACAACACCTCCTGCTG
GTTTATCTACAGAGGGAACTGTATCAAATGAGGAGTGGCAGAACATTCACAGTGGTAGCG
AAAGACTCGGACCACCAGAAGAGCCTCCAACTCAACAATCGTAATCCTGGAAATATCTCT
TAATTTCATGGCCACCCTTGAGTTGGATCTATTGCACAACATGCAGTCTTCCGTGCCAGT
CACTGACTGCAACCATGCTTGGTAGTACGGGGTGACAGCGTACGTCTACACATGCTGCAT
CCTGGCCATCATTTGTTGGCGGCAATGGCACTGTCCGCAAATAATTACCATTGCTGTGTT
TGTAGCAAACCAGAGATTCACTGGAGCTTCCAGAATATACAAAACTACCATCCTTAGTTA
TGTCAAAAGACACCGGAAATTCGTTGACCTTTTGGGAAAAAAAATAATGAAGTAAAAGTG
ACAAAATATCATATGATTTTTAATTTTATTCTTTTTTTTATATATATTCATTGCGGTACA
GTGGCTCAAAAAAAAATTCTGCGGATCTGTGATATAGTTATTAATCTATTGTATGCCTTA
ATTATTCAGTGCAATAAAAGAATTCTGTTA

InterProScan

Pfam	Peroxin-13_N (IPR007223) - T[114-246] 1.1E-42
SUPERFAMILY	SH3-like_dom_sf (IPR036028) - T[255-327] 3.02E-13
ProSiteProfiles	SH3_domain (IPR001452) - T[264-328] 11.534
SMART	SH3_domain (IPR001452) - T[267-327] 1.9E-9
Pfam	SH3_domain (IPR001452) - T[271-324] 7.7E-9

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PEX13_HUMAN	48.447 %	283	8.18E-93