Aniseed - Transcript Card

Transcript 'KH2012:KH.C1.1278.v1...'

Transcript Model

Transcript Id

KH2012:KH.C1.1278.v1.A.nonSL2-1

Possible name(s)

NSMCE1

Gene model

KH2012:KH.C1.1278

Location

KhC1 [4,766,477 / 4,767,955]

Sequences

Amino acid sequence

Length: 279

>KH.C1.1278.v1.A.nonSL2-1
FSSKLIRKYCAMSAYKKCHIYFLQSIMNKTILSESECQQIRQESYQVSEVTPEGNLLDFL
QVINDQLHPFHFKIRQSKREDTGETVYVLISLVDNDLNRLVVGGDFARAELEYFKKILEI
IIVMSDTQNVGTASSIDILNLADSCSPRMSKTEAKRLLTRFVDERWFYDNEGIISLSPRC
ILELEQYLSQCFDSFVSVCTMCSNTVFQAQVCSNCSARMHHHCARTYSKRKTTSLKCLSC
NHPFPHLQSEDNGVTGESTSFHTENTSESSRKKKRTHAH

Nucleotide sequence

Length: 1,478

>KH2012:KH.C1.1278.v1.A.nonSL2-1
AGTTTGATTTTCCTCCAAATTAATACGCAAATATTGTGCAATGAGCGCGTATAAAAAATG
TCACATCTATTTTTTACAATCAATAATGAACAAAACAATATTAAGTGAAAGCGAATGTCA
GCAAATTCGTCAGGAAAGTTACCAAGTTTCTGAAGTAACGCCAGAGGGAAATCTTTTGGA
TTTTCTACAAGTTATTAATGACCAACTTCATCCGTTTCATTTTAAAATTCGCCAAAGCAA
GCGTGAAGACACTGGAGAAACAGTTTACGTTTTAATAAGTTTGGTGGACAATGACCTTAA
CCGTTTAGTCGTCGGTGGCGATTTCGCGCGCGCTGAACTGGAATATTTTAAGAAAATCCT
GGAAATCATAATTGTCATGTCAGATACACAAAACGTGGGGACTGCGTCTTCAATTGATAT
TTTAAATTTGGCTGATTCTTGTTCACCGAGAATGAGCAAAACTGAAGCCAAGAGGTTGCT
CACACGGTTTGTGGATGAGCGGTGGTTTTACGACAACGAAGGAATCATCTCTTTATCTCC
ACGTTGTATTCTCGAACTAGAGCAGTATCTATCTCAGTGCTTCGACAGTTTTGTGTCAGT
ATGCACAATGTGTTCAAACACTGTTTTTCAAGCTCAAGTTTGCTCGAATTGTTCTGCGCG
TATGCATCACCACTGTGCAAGAACGTACAGCAAAAGAAAAACCACTTCTCTAAAATGTCT
TTCTTGCAATCATCCATTTCCACACCTTCAGTCAGAAGATAATGGTGTCACAGGGGAAAG
TACCTCTTTTCATACTGAAAATACTTCAGAATCATCACGAAAAAAGAAAAGAACCCATGC
TCACTGATTTTCGTTTTAAAGTAGAACTTATGCTGTGTCTTAACAATACACACAAAAATC
GGGAGCATGGCGAGCTTCATTAGTATAAAACAATGTTCATGGTTAGTAACACCTGCTAGT
CATGTTCATGTGTAATATTGTTCTTCCGTATTTTAGAGACGCCCAATCTTTTCCCCGAAT
TTGTTACATCAAAATGTCTCCAAATAACTGAAAGGCTTAGTTGCAATGTTTTAATGTCAT
TTTAAAACTAGCCTACATTTAAACAAAAAATACTAAAACATACTTGCCTAATTAGAATGT
TGTTTTTGGTGCTTTTTGCTGTTTATGTACTTTTTTTCTATGATTATAACAGTAAAGACA
CATGTTGCTTACTTGAATTAAAATCTTTTGTTTTGTATTCAAAGTATAAATTTCAAGATG
TTTTGATAAAAATTACTCAAATTTATATTAAAACACACAAAATCAAGTGTATACATATGC
ATACAGTTAATTGTATATGTAATCCATCAGCAGTACACTACAATTGTAGTTGACTGTGTA
CAGGCTGTTTTCTATTTGTACATTGTGCACATTGTGGTCTGAGAAATATTTTTAAACAAT
TTCATTTCTAACAATTTCTTCTTTTCAATTTTCCAAAG

InterProScan

PANTHER	Nse1 (IPR011513) - T[11-270] 1.0E-64
Pfam	Nse1 (IPR011513) - T[21-184] 1.2E-21
Gene3D	WH-like_DNA-bd_sf (IPR036388) - T[101-195] 9.7E-26
Gene3D	Znf_RING/FYVE/PHD (IPR013083) - T[197-252] 1.5E-10
Pfam	Znf_RING-like (IPR014857) - T[199-240] 3.8E-6

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NSE1_HUMAN	33.333 %	142	6.88E-41