- Transcript 'KH2012:KH.C13.156.v1...'
Transcript Model
Transcript Id
KH2012:KH.C13.156.v1.A.SL1-1
Possible name(s)
ELP2; NLE1; WDR33
Gene model
Location
KhC13 [1,773,322 / 1,776,036]
Amino acid sequence
Length: 794
>KH.C13.156.v1.A.SL1-1
GNKIMKCNVNLEHVALCCNKNPHCLDHGPDDVIAFGSSNSVVIYEPVKYKDGIPVTAHVV
STLNHHRGPVGCVKWIRRFSDDGILKTPFLLSGSVDKTITCWKIGIENGKFDKSEEILAE
LKGHSGTITAMDGIVVGNRNLISSAGADSCVKIWFHSDNITMVDCVQTIDFNNGFVHGLS
MHMIPNTKVPMLALACDDFKIHIYNLNGDILELEKVEFKLTVCLSGHEDWVRDVDFLSSS
GDLILSSCSQDGFVRLWKIQKQKEIEKNDFSELKMKQQNFEVCGVKYSVCIEAVLSGHEN
WVYSVQWVHGTQPMLLSASIDKTVVVWEYDVDCGMWIDKVRVGEVGGNTLGFYGAQCNDK
GNQIVAHSHSGALHAWDLKGNGEWKPAVVVTGHSAPVLDISWEPLHGRYLLTTGDDQTTR
VLSQWVRECGFKSWHEIARPQIHGYDITCLSMMHSLKFVSGADEKVLRVFEAPKNYLENL
KSLTGFELIKTDMNHPEGATVPALGLSNKAVLAGSKCEKESDRSEQYIENMFIPAVLDRP
PPETHLLQNTLWPEVRKLYGHVYEIFCVACSKDGNLIASAAKSSKPQHAGIIIWDTNIMQ
QVDTLHGHTLTVTQMEFSPNGNYLLSVSRDRTWIIHKINKVNSTYEFSIHSKSEKKASHS
RIIWSCSWAHDSKLFVTGSRDKKLMIWEVINDTVNRLCVEDCGQPITAVAFSSKLVSMNY
IIAYGLENGRINISLFSTSGSLFQTISMFNLNFSHCLAVKRLQWKPNVEENSNLVLASCS
LDNQVKMFEVLLES
Nucleotide sequence
Length: 2,714
>KH2012:KH.C13.156.v1.A.SL1-1
ACATAAGGTAATAAAATAATGAAGTGTAATGTGAATCTAGAACACGTAGCTTTGTGTTGT
AACAAAAACCCTCATTGTTTGGATCATGGACCTGATGACGTCATCGCTTTTGGGAGTTCA
AATTCCGTGGTTATTTATGAGCCGGTGAAGTATAAAGATGGGATTCCAGTCACAGCCCAC
GTTGTTTCCACTTTAAACCACCATAGAGGTCCTGTAGGGTGCGTCAAGTGGATTCGAAGG
TTTAGCGATGATGGGATTTTAAAGACGCCATTTTTGCTCTCGGGATCAGTAGATAAAACT
ATCACGTGCTGGAAAATTGGGATCGAAAATGGAAAGTTTGATAAAAGTGAAGAAATTCTT
GCTGAGTTAAAAGGACATAGTGGGACCATCACTGCTATGGATGGGATAGTCGTTGGGAAT
AGAAATCTTATATCTTCAGCTGGTGCTGATTCTTGTGTTAAAATATGGTTTCATAGCGAT
AATATAACAATGGTTGATTGTGTTCAAACAATTGACTTTAACAATGGGTTTGTCCATGGA
CTTTCAATGCATATGATACCAAACACTAAGGTTCCAATGCTGGCACTTGCATGCGATGAT
TTTAAGATTCATATTTACAACTTAAATGGGGATATATTGGAGTTGGAAAAAGTGGAGTTT
AAATTAACCGTGTGTCTAAGTGGGCATGAGGATTGGGTCAGAGATGTCGACTTTTTATCA
AGTTCTGGAGATTTAATTTTATCAAGTTGTTCGCAGGACGGTTTTGTGCGTTTGTGGAAA
ATTCAGAAGCAAAAAGAAATTGAGAAAAATGATTTTTCTGAGTTAAAGATGAAACAGCAG
AATTTTGAAGTTTGTGGAGTGAAGTATTCAGTTTGTATTGAAGCAGTTTTATCGGGGCAT
GAAAATTGGGTTTATAGTGTTCAGTGGGTTCATGGGACACAACCTATGCTGTTATCAGCT
TCCATTGATAAAACTGTGGTCGTATGGGAGTATGATGTTGACTGTGGGATGTGGATTGAT
AAAGTTCGGGTTGGGGAAGTAGGGGGAAATACCCTGGGGTTTTATGGAGCACAGTGTAAT
GATAAAGGCAACCAGATAGTTGCCCATAGCCACAGTGGTGCTTTGCATGCATGGGATTTG
AAGGGGAATGGAGAATGGAAACCTGCTGTGGTCGTGACTGGACATTCTGCTCCTGTATTA
GACATAAGTTGGGAACCTTTACATGGGAGATACTTGTTAACTACAGGAGATGACCAAACC
ACAAGGGTTCTCTCACAGTGGGTTCGTGAGTGTGGTTTCAAATCATGGCATGAGATAGCA
AGACCACAAATTCACGGATATGATATCACGTGTTTATCCATGATGCATTCACTGAAATTT
GTGTCCGGCGCGGATGAAAAAGTTTTGCGGGTTTTTGAAGCCCCGAAAAATTATTTGGAA
AATTTGAAAAGCCTTACAGGGTTTGAGTTGATAAAAACTGATATGAATCACCCTGAAGGG
GCAACTGTTCCCGCTCTTGGTTTGTCCAATAAAGCTGTTCTTGCTGGTAGTAAATGTGAA
AAGGAAAGCGACCGCAGTGAGCAGTATATTGAGAATATGTTTATACCCGCTGTGTTGGAT
CGACCACCACCTGAAACGCATCTCTTGCAGAATACACTGTGGCCTGAGGTGCGGAAGTTG
TACGGACATGTCTATGAAATATTTTGTGTGGCTTGCAGTAAAGATGGAAACTTGATTGCA
TCAGCTGCAAAGTCATCCAAGCCCCAACATGCAGGAATAATAATATGGGATACAAATATA
ATGCAACAGGTTGATACATTACATGGGCATACGTTAACTGTCACTCAAATGGAGTTTTCA
CCCAATGGAAATTACCTTCTATCTGTTTCAAGGGACCGGACGTGGATTATTCATAAAATC
AACAAAGTCAACTCAACTTACGAGTTTTCAATCCACAGTAAAAGCGAGAAAAAGGCCTCC
CACTCACGGATCATATGGTCGTGCTCATGGGCTCATGATAGCAAGTTATTTGTCACGGGA
TCACGGGATAAAAAACTCATGATATGGGAGGTGATTAATGATACAGTGAATAGATTATGT
GTTGAAGATTGTGGACAACCAATAACAGCCGTTGCTTTCAGTTCAAAGTTGGTTTCCATG
AACTACATTATAGCATATGGGCTGGAGAACGGTAGAATTAATATTTCTTTGTTTTCAACA
TCTGGTTCTTTGTTTCAAACAATCTCAATGTTTAATCTCAACTTCTCCCATTGTTTAGCA
GTGAAACGACTTCAATGGAAACCAAATGTTGAGGAAAATTCAAATCTTGTTTTGGCTTCT
TGTAGTTTAGATAATCAAGTTAAAATGTTTGAAGTTTTATTAGAAAGTTAATTAAACTAA
ATTGGATGTATAAAAAACTATCTTTGGTGCTGTTTAGGCTATATGTCATGTTAGTAGTTT
TAATTAATGCAATATCACCTGTTTCAATCAATGAGGTTCCTATGTTTTACAATTGTGTAT
AACTGTATTTTAACAATGTCACCTTAGATTTTGTCTAAAATTCAAAAACCGTTATTATTG
CCAACGTTTTAATCATATCCCAGTGTCTCATTTCTGCCCTGCTTTTGAACCTTACAATAT
AAATGAGGTCCCCAGTTTAAAACCCCCCTAAAATAGCAAAATAATAACATGTTCCCACTT
ACGTTTTGCTCCAG
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[4-173] 4.1E-14 - T[180-269] 8.4E-14 - T[274-336] 7.7E-7 - T[348-647] 6.1E-38 - T[648-793] 8.6E-16 |
| PANTHER |
Elp2 (IPR037289) - T[10-790] 8.8E-284 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[13-266] 1.08E-34 - T[293-479] 2.56E-36 - T[294-330] 1.08E-34 - T[556-651] 2.56E-36 |
| SMART |
WD40_repeat (IPR001680) - T[56-103] 1.5E-4 - T[114-155] 0.056 - T[162-205] 200.0 - T[217-258] 7.7E-6 - T[288-328] 2.2E-6 - T[338-377] 260.0 - T[383-423] 0.013 - T[433-471] 11.0 - T[551-595] 0.0018 - T[598-637] 2.9E-6 - T[650-688] 5.2E-5 - T[739-789] 22.0 |
| Pfam |
WD40_repeat (IPR001680) - T[60-103] 0.032 - T[117-154] 0.025 - T[222-258] 2.8E-4 - T[294-327] 0.0063 - T[600-632] 0.0025 - T[658-687] 3.0E-4 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[224-267] 11.344 - T[295-328] 10.943 - T[605-632] 9.472 - T[656-689] 11.344 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[224-421] 14.793 - T[558-697] 16.19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ELP2_HUMAN | 42.093 % | 595 | 0 |