- Transcript 'KH2012:KH.S406.22.v1...' >
- Transcript 'KH2012:KH.S406.22.v1...' >
- Transcript 'KH2012:KH.C6.132.v5....' >
- Transcript 'KH2012:KH.C14.130.v1...'
Transcript Model
Transcript Id
KH2012:KH.C14.130.v1.A.ND1-1
Possible name(s)
DNA2; IGHMBP2; UPF1
Gene model
Location
KhC14 [962,791 / 971,707]
Amino acid sequence
Length: 1,049
>KH.C14.130.v1.A.ND1-1
MLIEEFVSKHLDLLAEEHAAEVEENRAGNATLSQSVLKRKGLCIPKLEVTGVKTGLYGRT
VAKFGLKSADKSLPFNVFKTGDIVGIDQVQSETSGSGIVSHTSDKHISVAFEGSEMRDTL
DSLAHNRNSVALIKLANEVTYKRLKRALEDLKKYSDGPSQHLIEVLFGDTKPQQFNLQEL
TFVNQNLNECQHNAVKFALSQSELAIIHGPPGTGKTTTVVEVIAQLVKAGRKVLACAPSN
VAVDNLVEKLSSISVDKVSGGKMSIVRLGHPARMLEKEVKQLSLDALVSSSDAAAIVRDV
RSDIEAVQKSLSRCPDKGKRFSLRQERKLLFSELKQRENKALNEILSSADVILATNVGAH
AKGPLQHLPHDYFDDVIIDECGQSLEAACWISLLRARRCILAGDHLQLPPTIISHKAAAN
GLATTLLERMINLQGDSVVSMLTEQYRMHRDIMHWASKKMYDGKLTANCKVQCHLLSDMP
GVDNTEDTRLPLLLVDTAGCEMYESESEESISKANTGEAMIVCSHVQTLVKAGVKESDIA
IISPYNLQVDLLRQSLKEKHPNIEIKSVDGFQGREKEAVILTLVRSNLDREIGFLSDKRR
LNVAVTRARRHLAVVCDSTTVCSDNFIKSLIDHITEHGDIRTGFEYLNDNENFQGFENLK
PVKQKQTGNSKKKEQKTTKQEPTPLTLWEIKEKYKKILLQLLEWQKTQTDPPETTFFDFS
KETLQQIVTENCSLAKTKILVVRKAQDSLEIAFPSILNSAERKAVHELCEEMSLGHGSLG
EDKDRHVVVSFRKQNTSSLETVTPATNTLEATGGKKQKESSNTEKVLPISQPKSVVPTKK
DIGKKITPVSTDLPKEVPHQGTLSNVPYSICSQCGKNLPEDNMTMHQIHCERIMRMKQET
KSLKIDQQQKIHLKSAKSKKKKISKQAAKKHNTDIGDDFDTLLNEAISSNKVCCHGNCHT
YVTTTGQHCPICKKTFCLKHHLPEVHGCGMQAHINARRQISRDGVLYNGGGVPDRIPDPT
KRAQLKKRLDAKVKVLESDRKVGKSKKNK
Nucleotide sequence
Length: 3,407
>KH2012:KH.C14.130.v1.A.ND1-1
ATGTTGATTGAGGAATTTGTGTCGAAACATCTTGATCTACTTGCTGAAGAACATGCAGCA
GAAGTTGAGGAAAATCGAGCTGGAAATGCAACTTTATCTCAGTCTGTTTTAAAACGAAAA
GGCTTGTGCATACCCAAACTGGAAGTGACAGGTGTTAAAACTGGGCTTTATGGTAGAACT
GTTGCAAAGTTTGGGTTGAAATCGGCAGACAAGTCTTTGCCATTTAATGTTTTTAAAACA
GGTGACATTGTTGGTATCGACCAGGTGCAATCGGAAACCTCTGGATCGGGTATTGTGTCG
CATACAAGCGATAAACATATCTCTGTTGCATTTGAAGGCAGTGAGATGAGAGATACATTG
GACTCTCTTGCTCACAACAGAAATTCAGTTGCGCTCATAAAACTTGCAAACGAAGTTACT
TACAAGAGACTAAAAAGAGCGTTGGAGGATTTAAAGAAATATTCTGATGGTCCTTCTCAA
CATTTGATTGAAGTTTTGTTTGGAGATACGAAACCACAACAGTTTAATTTGCAAGAATTG
ACTTTTGTCAACCAAAATTTGAACGAATGCCAACACAATGCTGTGAAATTTGCTTTATCG
CAAAGTGAGCTTGCAATAATACATGGACCTCCTGGAACTGGGAAAACAACCACTGTGGTT
GAGGTTATAGCACAACTTGTAAAAGCAGGCAGAAAGGTGTTAGCTTGTGCTCCCTCCAAT
GTAGCTGTCGATAATTTGGTTGAAAAGTTGTCCAGCATTTCAGTTGATAAAGTCAGTGGT
GGTAAGATGTCCATTGTAAGACTTGGCCACCCTGCAAGGATGCTCGAAAAGGAAGTCAAA
CAACTCTCATTGGATGCGTTAGTGTCCAGTAGTGATGCTGCTGCTATTGTTAGAGATGTG
AGGTCAGACATTGAAGCTGTACAGAAAAGTCTATCAAGGTGTCCTGATAAAGGGAAGAGA
TTTTCACTAAGACAGGAGCGGAAATTGCTGTTTTCTGAACTCAAGCAGCGTGAAAATAAA
GCCCTTAATGAAATCTTGTCATCAGCTGATGTCATACTTGCCACTAATGTAGGGGCCCAT
GCAAAGGGACCACTTCAGCATTTACCACATGACTACTTTGATGATGTCATAATAGACGAA
TGTGGTCAATCGCTCGAAGCAGCTTGTTGGATATCTTTACTACGTGCACGACGATGTATA
CTTGCCGGTGATCATTTGCAACTCCCACCAACTATAATATCACACAAAGCCGCAGCTAAT
GGTTTGGCAACCACATTGCTTGAACGCATGATAAACTTACAGGGTGATTCAGTTGTGTCT
ATGCTAACAGAGCAATACAGAATGCACAGAGATATTATGCATTGGGCTTCTAAGAAAATG
TATGACGGAAAATTAACTGCAAACTGTAAAGTACAGTGTCACTTATTAAGTGATATGCCT
GGTGTAGATAACACAGAAGATACAAGACTACCATTGTTACTTGTAGATACTGCTGGCTGT
GAAATGTACGAGTCAGAATCTGAAGAAAGCATTTCAAAAGCAAACACAGGAGAAGCAATG
ATAGTATGTTCACATGTACAAACCTTGGTAAAAGCTGGGGTTAAGGAATCAGATATTGCT
ATAATATCTCCGTATAACTTACAGGTTGATCTACTGAGACAGTCACTAAAAGAGAAACAT
CCTAATATTGAAATTAAATCAGTTGATGGATTTCAGGGGAGAGAAAAAGAAGCAGTTATT
CTCACTCTAGTTCGTTCAAATTTGGATAGAGAAATAGGATTTCTATCGGACAAAAGGCGT
TTAAATGTTGCAGTCACAAGAGCACGGCGCCACCTAGCTGTTGTGTGCGATTCGACGACA
GTTTGCAGCGATAATTTTATCAAATCACTAATTGATCATATAACCGAACATGGGGATATT
CGTACTGGTTTTGAATACTTGAATGATAACGAAAATTTCCAAGGCTTTGAAAATCTAAAA
CCAGTGAAACAAAAGCAGACTGGAAATAGCAAGAAAAAGGAACAAAAAACGACTAAGCAA
GAACCAACTCCACTAACACTGTGGGAAATTAAGGAAAAATATAAGAAAATCTTACTGCAG
CTCCTGGAATGGCAGAAAACACAGACTGATCCACCCGAAACTACATTCTTTGATTTTTCA
AAAGAAACTTTGCAGCAAATTGTGACTGAAAATTGCTCTTTGGCTAAAACTAAGATTTTA
GTTGTAAGGAAAGCACAGGATAGTTTAGAAATAGCGTTCCCGTCTATTCTCAACTCAGCT
GAGCGTAAAGCAGTGCATGAATTATGTGAAGAAATGAGTTTGGGCCATGGAAGTTTAGGT
GAGGATAAGGATAGGCACGTCGTGGTCAGTTTCCGGAAACAAAATACCTCAAGTTTGGAA
ACTGTAACTCCTGCTACTAATACACTTGAAGCAACTGGCGGGAAAAAACAAAAAGAATCT
TCAAATACAGAAAAGGTTTTGCCAATTTCTCAGCCAAAATCTGTTGTTCCAACGAAAAAA
GATATTGGTAAAAAAATCACTCCAGTTTCAACTGACTTACCGAAAGAAGTGCCACACCAG
GGTACATTAAGTAATGTGCCATACTCTATTTGTTCGCAATGTGGGAAAAATCTGCCAGAA
GATAATATGACAATGCATCAAATACACTGTGAGAGAATAATGAGAATGAAACAAGAAACA
AAAAGTTTAAAAATAGATCAACAACAAAAAATTCACCTAAAATCTGCCAAGTCAAAGAAA
AAGAAAATATCTAAACAAGCTGCTAAGAAACACAATACTGATATTGGAGATGATTTTGAC
ACATTGTTAAATGAAGCCATATCGTCAAATAAAGTTTGTTGTCATGGCAACTGTCATACC
TACGTAACCACTACTGGCCAGCATTGCCCAATATGCAAGAAAACTTTCTGTTTAAAGCAT
CATTTACCAGAAGTTCATGGTTGTGGCATGCAGGCACACATTAATGCCCGTCGTCAAATA
AGTAGAGATGGTGTTCTGTATAACGGTGGGGGGGTGCCGGATCGAATCCCTGACCCTACA
AAACGGGCTCAACTCAAAAAACGACTAGATGCAAAAGTAAAAGTCCTTGAGAGTGATAGG
AAAGTGGGAAAGAGTAAAAAAAATAAATAAAATTTGTTGTTTTCCTGTTTTGGTACTACG
TGCTTGGTGTATGCATTTTCTAGATCTCGCTTGTGTTGTGTAATGTGTGTAAGTGCTAAA
CGCAATTCGCCAATCTTTCACGCCTCTTAATTTTAACAATTTCACACTATGCACTCCCTT
CTTAGCTTTGCGGGTGTTCATCTATCCGGGTGTTCACATGACAGTTCTACGCGTCTCGCT
TTGGCATTCGTGTATTTAGGTTTTTGAATAAAAAACAAGGGAAGCCG
| TIGRFAM |
SMUBP-2/Hcs1-like (IPR004483) - T[17-642] 2.4E-190 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[185-630] 2.04E-69 |
| SMART |
AAA+_ATPase (IPR003593) - T[201-436] 7.6E-4 |
| SMART |
R3H_dom (IPR001374) - T[714-792] 5.0E-4 |
| ProSiteProfiles |
R3H_dom (IPR001374) - T[725-793] 12.127 |
| Gene3D |
R3H_dom_sf (IPR036867) - T[725-798] 1.1E-13 |
| SUPERFAMILY |
R3H_dom_sf (IPR036867) - T[740-790] 4.51E-9 |
| Pfam |
R3H_dom (IPR001374) - T[742-790] 2.3E-9 |
| SUPERFAMILY |
AN1-like_Znf (IPR035896) - T[934-1008] 1.44E-14 |
| Gene3D |
AN1-like_Znf (IPR035896) - T[940-1005] 4.9E-6 |
| SMART |
Znf_AN1 (IPR000058) - T[954-993] 3.3E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RENT1_HUMAN | 34.167 % | 201 | 1.05E-52 |
| SMBP2_HUMAN | 44.886 % | 823 | 0 |
| DNA2_HUMAN | 29.087 % | 164 | 2.31E-41 |