- Transcript 'KH2012:KH.C14.225.v1...'
Transcript Model
Transcript Id
KH2012:KH.C14.225.v1.A.SL1-1
Possible name(s)
FP565260.1; GNB5; PWP2
Gene model
Location
KhC14 [129,456 / 146,520]
Amino acid sequence
Length: 849
>KH.C14.225.v1.A.SL1-1
LKMKFNYKFSNLVGTVYRTGNISFLKDGDTVISPVGNRVSLFDLKNNKSETLPITTKYNI
VTVAVAPNGCTAILVDEEGEATLISLISKSVLHRHHFRKPIKCIKYSPDGRKFAVTKDNL
VLVYHAPGMSRELNPFQLQRTFYGAYGETTCIDWTTDSRCLAFAVGGSDMNTRVYAAMKC
DNLVVYSLGAHKDEIIGCFFEANSLDIYTVSRDGTLNVWESNTELKDLKTPNIEKETKEE
DSDVTNSDEEQIEEKKSKILYKRIAKLVKYHKLFLYFFNKEGEFNSVTSTAYHTKTHVLV
TGLATGAFHIHELPDFNLIHSLSISEHRITAAAFNNTGDWLALASSALGQLLVWEWQSES
YILKQQGHYSGMTCLDYSPDGRYIVTGGEDGKVKVWNTSNGFCFVTFSEHKSNVTGVCFT
SSGHVIISSSLDGTVRAFDLHRYRNFRTFTSPRPTQFVCLSVDGSGELVAAGSRDTFEVF
VWSIRTGRLLDILAAHEAPVSSLAFSPTESILASGSWDHSVIVWRIGDEKGARESFDVCH
DVMAITFRSDGKELAVSTLNAEITFWDVKTVTQTGSVDCRFDIGSGRSELDRVTAKTNSF
GKSFDTLCYTADGSAIIAGGRTKNVCVYHVNNKLLMKKFEISSNYSFDAMEEFLDKRKMT
EFGPSAMIDTVEETTIKLPGVRSGDMCARAFKPEVRVFDAKFSPTGNTAIMMSLRLNEKL
LTREVIESIPSDNIELISQNLPIKYVDKILIFLASELETSGHIHFILMWIRFLLTKHGPA
LKSDSNHMMAAMRHLQKNLTRKSDTILKLMDANFYQNQYVIALAKLKRNRLDISQPSDEV
DSEIICELE
Nucleotide sequence
Length: 3,105
>KH2012:KH.C14.225.v1.A.SL1-1
GAGGTTAAGATAATGTGTTGCATTTAGTTGAAAATGAAGTTTAATTACAAGTTTTCCAAC
TTGGTGGGCACCGTATATCGGACAGGAAATATCTCATTTCTAAAAGATGGTGACACAGTG
ATTAGTCCTGTGGGGAATCGAGTATCTCTGTTTGATCTGAAAAACAACAAATCTGAGACG
TTACCGATCACAACGAAATATAATATCGTCACCGTAGCCGTTGCACCTAATGGGTGTACT
GCTATTCTTGTGGATGAAGAGGGAGAAGCGACACTAATAAGTCTCATCAGCAAATCTGTT
TTACATCGACATCACTTCAGGAAACCAATTAAATGCATCAAATATAGCCCCGATGGCCGC
AAGTTTGCCGTCACTAAAGATAATCTTGTATTGGTGTACCATGCTCCTGGTATGTCAAGA
GAATTGAACCCGTTCCAATTACAAAGAACATTTTATGGAGCGTACGGTGAAACTACATGT
ATAGATTGGACAACTGATAGCAGGTGTTTAGCCTTCGCTGTTGGTGGTAGTGACATGAAC
ACACGAGTGTACGCTGCTATGAAATGTGACAATCTGGTCGTGTATTCACTTGGTGCTCAT
AAAGATGAAATTATTGGTTGTTTCTTCGAAGCCAATTCACTTGACATATACACAGTAAGT
AGAGATGGAACACTTAATGTATGGGAGTCAAATACTGAACTTAAAGATTTGAAAACTCCA
AATATTGAAAAAGAAACTAAAGAAGAAGATTCTGATGTCACAAATAGTGATGAAGAACAA
ATTGAAGAAAAGAAATCAAAAATTTTGTACAAAAGAATCGCAAAGTTAGTTAAATATCAT
AAACTGTTCCTATATTTTTTCAACAAAGAAGGCGAATTCAACAGCGTAACCAGCACAGCA
TACCACACAAAAACACATGTGTTGGTCACAGGGTTGGCAACCGGAGCTTTCCATATTCAT
GAATTGCCCGATTTCAATCTTATACATTCATTAAGTATTTCGGAGCACCGTATAACCGCA
GCAGCTTTCAACAACACTGGCGATTGGTTGGCTTTAGCTTCCAGTGCGTTGGGTCAGTTA
CTAGTATGGGAGTGGCAGAGTGAATCTTATATATTGAAACAACAAGGCCATTATAGTGGA
ATGACATGTCTGGATTATTCACCTGATGGAAGATACATTGTAACAGGGGGAGAAGATGGA
AAGGTTAAAGTTTGGAACACGAGCAATGGATTTTGTTTCGTGACTTTCTCGGAACATAAA
TCGAATGTTACGGGTGTTTGCTTCACTTCATCTGGTCATGTGATCATATCTTCGTCACTA
GATGGCACTGTGAGGGCGTTCGATTTGCACAGATATCGGAACTTTCGAACGTTCACGTCG
CCCCGACCGACACAGTTCGTTTGCTTGTCAGTAGATGGCAGTGGTGAGCTGGTGGCCGCT
GGGTCACGTGACACATTCGAGGTGTTTGTGTGGTCGATTAGAACCGGTCGTTTACTCGAT
ATTCTTGCAGCCCACGAAGCCCCGGTATCCTCCCTCGCATTCTCACCAACGGAGTCGATA
CTAGCGAGTGGCTCGTGGGATCATAGCGTCATCGTGTGGAGAATCGGGGACGAGAAAGGA
GCAAGAGAATCGTTCGACGTTTGCCATGATGTTATGGCGATAACGTTCAGATCAGATGGT
AAAGAGCTCGCCGTATCAACACTTAACGCGGAGATAACTTTCTGGGATGTTAAGACAGTT
ACACAAACTGGATCCGTGGATTGCAGGTTTGATATAGGCAGTGGAAGAAGCGAATTAGAT
AGAGTTACCGCAAAAACAAATTCTTTTGGAAAATCATTCGATACATTATGTTATACTGCA
GATGGGTCGGCAATTATTGCAGGTGGTCGCACAAAGAACGTATGTGTCTACCACGTTAAT
AATAAACTATTGATGAAGAAATTTGAAATTTCAAGCAATTACTCGTTTGATGCTATGGAG
GAATTTCTTGATAAACGGAAAATGACGGAGTTTGGTCCATCAGCAATGATTGACACAGTT
GAAGAAACGACAATCAAACTACCAGGTGTACGAAGTGGAGATATGTGCGCTCGTGCGTTT
AAACCTGAAGTGAGGGTGTTCGATGCTAAATTCTCCCCAACTGGTAACACAGCTATTATG
ATGAGTCTTCGACTTAATGAGAAATTATTAACCAGAGAAGTTATCGAATCTATACCAAGC
GATAATATTGAACTGATCAGCCAAAACCTGCCAATCAAATATGTTGACAAGATCCTCATA
TTTCTTGCATCGGAGCTTGAGACATCCGGTCACATCCACTTCATCCTGATGTGGATCCGG
TTCCTTCTCACCAAACATGGTCCCGCACTCAAATCTGACTCCAACCACATGATGGCAGCA
ATGAGACATCTCCAGAAAAATTTAACGCGAAAATCTGACACTATTTTAAAATTAATGGAC
GCCAACTTCTATCAAAACCAATACGTGATAGCTCTTGCTAAACTGAAGCGGAATCGCTTG
GATATTTCTCAACCATCTGATGAAGTCGACAGTGAAATTATTTGCGAACTTGAATAATGC
GTAATACAGATTTGGATCACTCACAAACTTTACAATCAATTATTAATTGTTTCTGTTAGT
GTCGCGATATATTTGTTCCGCATATTGAATTTGTACCGAGCGCCATTGCGCATACGCCGA
AACGCTACTGCGATATTATAATGACCACCCGTTTTAACTTTAATACCAGAGTTCGTATAT
AAACATGTTTATATACGGACTCTGTTTAATACGACCCTACGCTGAAAACAGTCCGCACAG
AACGTTTACATGTTTAAAAAAGTGCAATAGATATGTGTTGCCGTATAGAAGAGAATAGAA
CTTTTCAGAAATCGCCAAGGCTCACAACTTTGCAGTACTGTAGTCGGTTAAAAATAGACA
CTTGATTTAACGGATACAGCTCTCTTGTTATATACAAAAACAAACAGCGACCACTAACGG
ACCAATGATTTCATTATTTTATCCATTCCAACTTTCGTTCGTATGTGTGTTTGTTACAGT
TTGTACTGTAAGGAACTTTATTTGTTGATTGTGTTTTTGTTGTAG
| PANTHER |
PWP2 (IPR027145) - T[5-707] 0.0 - T[708-832] 0.0 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[7-221] 3.1E-18 - T[232-451] 1.5E-36 - T[455-718] 1.2E-28 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[21-234] 4.58E-27 - T[277-323] 4.58E-27 - T[281-568] 9.16E-60 - T[540-641] 3.3E-6 |
| SMART |
WD40_repeat (IPR001680) - T[88-125] 2.7 - T[135-176] 3.3 - T[181-220] 0.18 - T[315-355] 3.1 - T[358-397] 2.2E-9 - T[400-439] 2.6E-6 - T[442-483] 50.0 - T[486-525] 1.8E-9 - T[532-567] 16.0 - T[590-629] 160.0 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[188-220] 9.205 - T[365-406] 15.989 - T[407-448] 11.611 - T[493-534] 14.519 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[188-229] 8.808 - T[280-576] 40.84 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[207-221] . - T[384-398] . |
| Pfam |
WD40_repeat (IPR001680) - T[366-397] 1.5E-8 - T[403-438] 3.8E-4 - T[488-524] 3.4E-6 |
| Pfam |
SSU_processome_Utp12 (IPR007148) - T[717-821] 7.9E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| POC1A_HUMAN | 32.402 % | 96.7 | 4.04E-21 |
| GNB5_HUMAN | 34.135 % | 108 | 2.27E-25 |
| PWP2_HUMAN | 52.076 % | 968 | 0 |