Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 742

>KH.C1.690.v1.A.SL1-1
DHCLLKMSVQPSDIQNFKAWKGKKRKRKFVKKPKKEIEKEETVSLVDLDTTKVEKFEEFP
FATKTKAGLRKAGFVSLTAIQRAAIKPAMLGKDILGAAKTGSGKTLAFIIPILECLHKHN
WNSLDGPGALVISPTRELAFQIFEVLKKVGGKHNFSAGLLIGGNNVKEEAHSVGKTNIII
CTPGRLLQHMDTTSYFHMNNLKMLILDEADRILDMGFKTTLDAIIENLPSERQTLLFSAT
QTKSVKDLARLSLRDPAYISVHSEAKHSTPQGLTQRFICCELKDKLNVLFSFIRNHQKSK
CLVFVSSCKQVQFIFAAFCKLRPGTPMLHLHGRMNQLRRMSVYQEFCRKKFAVLVATDIA
ARGLDFPEIDWVVQLDCPEDADTYIHRAGRTARYNGNGNSLLVLTPTEKEAMLKHLQNKK
VPILKSEIQSNKLGKIDRKLQSYCAEDKEFKEKAQRCFVAYIRSTFLMKDKSVFDAMKVP
FSEFSSSLGLAIPPRVRFLERKMKSLKMKENSAVNDETKSSEFNFNEIDDECDLITVKRK
NVFEEEEETSEVEEFAPDVALDPAKKKRSKAAEARRLLRKGMRMNQKIKFGDEGEVAEAF
PPLPPSGEDGDGINIEEAAKAMQEADVKDREKHRLRIRERHRKKRLEAKKERRRLQAELE
GGKQVVIGGDDDIGDDDIGDDVIGDDVMGDDVIDDDDVTNTVAYSDEEQEEEQEAKHRKL
NTGFGSSLDEDEMLALHLLRNK

Nucleotide sequence

Length: 2,413

>KH2012:KH.C1.690.v1.A.SL1-1
AAATTGTGTCAAAAAAGTAGGACCATTGTTTATTAAAGATGTCGGTTCAACCTTCAGACA
TTCAGAACTTTAAAGCTTGGAAAGGAAAGAAAAGAAAAAGGAAATTTGTGAAGAAACCAA
AGAAAGAAATTGAAAAAGAGGAAACTGTGAGCTTGGTTGATCTTGATACGACAAAAGTTG
AAAAGTTTGAAGAATTTCCTTTTGCTACAAAAACTAAGGCAGGTTTGCGAAAAGCTGGTT
TTGTGTCACTAACTGCAATTCAGCGAGCTGCTATTAAACCTGCGATGCTTGGGAAAGATA
TTTTAGGTGCAGCGAAAACTGGCTCAGGCAAAACATTAGCGTTCATTATTCCAATATTAG
AATGTTTGCATAAACATAACTGGAATTCGTTGGATGGCCCAGGCGCTTTGGTGATTTCCC
CAACACGAGAATTGGCGTTTCAAATATTTGAAGTTTTGAAGAAAGTTGGCGGGAAACATA
ATTTTTCAGCTGGTTTGCTTATTGGTGGGAATAATGTGAAAGAGGAAGCTCATAGCGTAG
GAAAAACTAATATTATAATCTGCACACCTGGGCGCTTATTGCAGCATATGGACACTACCT
CTTATTTTCATATGAATAACTTGAAAATGTTAATACTGGATGAAGCGGACAGGATATTGG
ACATGGGTTTTAAAACCACGTTGGATGCAATCATTGAAAACCTTCCTAGTGAGCGGCAAA
CTTTGTTATTTTCTGCAACGCAAACGAAATCTGTTAAGGACCTTGCCCGTTTAAGTTTGC
GGGACCCTGCCTATATTTCTGTTCATTCAGAAGCAAAACATTCAACTCCTCAGGGTTTAA
CACAAAGGTTTATCTGCTGTGAGCTTAAAGATAAATTGAATGTCTTGTTCTCATTTATAA
GAAACCACCAAAAATCAAAATGCCTGGTGTTTGTGAGCAGCTGTAAGCAGGTACAGTTTA
TATTTGCTGCATTCTGTAAGCTGCGCCCAGGCACACCGATGCTACATTTACATGGCCGCA
TGAACCAACTGCGCAGAATGTCAGTTTACCAAGAGTTCTGCCGTAAAAAGTTTGCAGTTT
TAGTGGCGACAGACATCGCAGCACGAGGTTTAGATTTTCCAGAGATTGACTGGGTAGTAC
AACTCGATTGTCCTGAAGATGCCGACACTTATATCCACAGAGCCGGACGTACAGCTCGAT
ATAACGGTAATGGGAACTCTCTCCTTGTGCTGACGCCCACAGAGAAAGAAGCAATGCTGA
AACATCTTCAAAACAAGAAAGTTCCGATTTTGAAGTCAGAAATCCAGTCAAACAAACTTG
GTAAAATTGACAGAAAACTTCAATCTTATTGTGCAGAGGATAAAGAATTTAAAGAGAAAG
CACAAAGATGTTTTGTAGCGTATATAAGATCCACATTTCTAATGAAAGATAAATCAGTGT
TTGATGCAATGAAGGTCCCATTTAGTGAATTCTCAAGCTCTCTTGGTCTTGCTATTCCAC
CTAGAGTTAGGTTTTTAGAACGGAAAATGAAATCTCTAAAAATGAAGGAAAATTCTGCTG
TAAATGATGAAACGAAATCTTCTGAGTTTAACTTTAATGAGATCGATGATGAATGTGATC
TTATTACTGTAAAGAGGAAGAATGTATTTGAAGAGGAGGAAGAGACTTCTGAGGTGGAGG
AGTTTGCTCCGGATGTTGCATTGGATCCTGCGAAGAAGAAAAGATCGAAAGCTGCGGAAG
CGCGGAGGTTGTTGAGAAAGGGGATGCGAATGAATCAGAAGATTAAGTTTGGGGACGAAG
GCGAGGTTGCCGAAGCGTTTCCTCCACTGCCTCCTAGTGGTGAGGATGGAGATGGTATTA
ACATTGAGGAAGCAGCGAAAGCGATGCAGGAGGCGGATGTAAAGGATCGTGAAAAACATC
GGTTGAGGATCAGGGAGCGGCATCGTAAGAAGAGGTTGGAAGCCAAGAAGGAGAGAAGAA
GATTGCAAGCTGAGTTGGAAGGGGGGAAACAAGTTGTTATTGGGGGTGATGATGACATAG
GTGATGATGACATAGGTGATGATGTCATAGGTGATGATGTCATGGGTGATGATGTGATAG
ATGATGATGATGTCACAAACACTGTTGCATACTCGGATGAGGAGCAAGAAGAAGAGCAAG
AGGCAAAACACCGGAAGTTGAATACTGGGTTTGGAAGCAGTTTAGATGAAGATGAAATGC
TTGCTTTGCATTTGTTAAGAAATAAATAGGAATGTCTTTGTGTGTGTTTGTAGGAAATGT
CTGAAACCGTTACTTTAATTGTGGAACTGTTTGAACTTACTCGCATTTCGTTAACCAATG
TCTTAAAACATTTTAAAATTAACGTCATTGTTTAACTACTGTCTTAATATTGGTTTCTAT
TTGCTCTGAACAG

InterProScan

ProSiteProfiles	RNA_helicase_DEAD_Q_motif (IPR014014) - T[54-82] 8.154
SMART	Helicase_ATP-bd (IPR014001) - T[73-276] 1.4E-56
Pfam	DEAD/DEAH_box_helicase_dom (IPR011545) - T[78-248] 7.8E-45
ProSiteProfiles	Helicase_ATP-bd (IPR014001) - T[85-259] 32.836
SUPERFAMILY	P-loop_NTPase (IPR027417) - T[126-414] 5.25E-66
ProSitePatterns	RNA-helicase_DEAD-box_CS (IPR000629) - T[205-213] .
CDD	Helicase_C (IPR001650) - T[283-403] 1.56638E-30
Pfam	Helicase_C (IPR001650) - T[284-394] 2.9E-24
ProSiteProfiles	Helicase_C (IPR001650) - T[285-444] 20.134
SMART	Helicase_C (IPR001650) - T[313-395] 1.0E-25
SMART	DUF4217 (IPR025313) - T[435-498] 1.3E-20
Pfam	DUF4217 (IPR025313) - T[436-496] 1.6E-14