Aniseed - Transcript Card

EST 'BW134976' >
Clone 'AHC0AAA196YA10' >
EST 'FF883225.1' >
Clone 'cieg067a24' >
Transcript 'KH2012:KH.C2.104.v2....'

Transcript Model

Transcript Id

KH2012:KH.C2.104.v2.A.nonSL1-1

Possible name(s)

RDH13; RDH14

Gene model

KH2012:KH.C2.104

Location

KhC2 [360,921 / 365,790]

Sequences

Amino acid sequence

Length: 319

>KH.C2.104.v2.A.nonSL1-1
FLSNVVWCSVIMSVSKGWVTSNVTLEGKTALITGANSGIGKETTRELSKRGAKVIMACRD
LANAEEVKKSIIEEFPNAKVEVGKLDLGSLKSVREFAKSVNDNENRLDILINNAGVMCCP
QGKTEDGFEMHLGINHIGHFLLTNLLLDLIKKSAPSRIICTASSGYKRGVMKWDDLMCDK
EYVPFNVYANSKLANCLFARELSRRLEGTGVTCNLIHPGLVLTNLGRHMYGEGRSIGKRI
LHAITWPIVLLVFKSPQRGAQSTIFCAVAEELKNTSGKYYNSDSEEEQLLDKALNEDDAQ
KLWKITEKLCGLNTDADTA

Nucleotide sequence

Length: 1,264

>KH2012:KH.C2.104.v2.A.nonSL1-1
GTTTCTTGTCTAACGTCGTCTGGTGCAGTGTTATTATGTCGGTGTCTAAGGGTTGGGTGA
CCAGCAATGTTACCTTGGAGGGCAAAACTGCCCTCATCACTGGTGCTAATTCAGGAATTG
GAAAAGAAACAACAAGGGAGCTATCAAAGCGAGGTGCAAAAGTTATTATGGCGTGCAGAG
ATCTTGCAAATGCTGAAGAAGTCAAAAAATCTATTATTGAAGAATTTCCAAATGCAAAAG
TTGAAGTGGGAAAATTAGATTTGGGATCGTTGAAATCTGTGAGAGAATTTGCAAAAAGTG
TAAATGACAATGAAAATAGATTGGATATTTTAATTAATAATGCAGGAGTTATGTGTTGCC
CTCAAGGCAAGACTGAGGATGGGTTTGAAATGCACTTGGGTATCAACCACATTGGACACT
TTCTCCTTACAAACCTTTTGTTGGATCTAATAAAAAAAAGTGCACCAAGTCGAATAATTT
GTACTGCATCTTCTGGGTACAAACGTGGTGTGATGAAATGGGATGATTTAATGTGTGACA
AAGAATATGTGCCGTTTAATGTTTATGCCAACAGCAAGCTAGCAAACTGTTTGTTTGCTC
GCGAGTTAAGTCGTCGGCTAGAAGGCACAGGCGTCACCTGTAATTTGATTCATCCTGGTT
TAGTTCTTACCAACCTTGGTAGGCATATGTATGGGGAAGGTCGATCAATTGGTAAACGTA
TCTTACATGCAATAACGTGGCCAATTGTGTTGTTGGTGTTCAAATCTCCACAGCGAGGAG
CACAAAGCACAATATTTTGTGCAGTTGCTGAAGAATTGAAAAATACAAGTGGAAAATATT
ACAACAGCGACAGTGAGGAAGAACAACTGTTGGATAAAGCTTTAAATGAAGATGATGCAC
AAAAGTTGTGGAAAATCACAGAAAAACTGTGTGGATTAAATACAGATGCTGATACAGCAT
AAATATTACTTTTTATAAGAAAATCCCACCTGCATGTGCTAATTTATCAGTTGATGGACA
TGTAAATTTTATATATTTTGCACTCATACCTAATGGTCTTTTTTTTGCGAGCAGTATTTA
GTATTACAGTGGCAAATGGCCGCCAATGTGTTTAGTATTGTTGCAAAATGTGTCAGGAAA
TACATTTAAATATTGCATTGCATTTTATATCTTTAGGCATATCACAATTTTTCCATATAC
TGTCATAATGAATATAATACTATTTGCATTCTTTTTTTATATACAACTTATTAATTCTTA
ACAG

InterProScan

SUPERFAMILY	NAD(P)-bd_dom_sf (IPR036291) - T[24-284] 5.49E-59
Pfam	SDR_fam (IPR002347) - T[28-227] 4.0E-31
PRINTS	SDR_fam (IPR002347) - T[29-46] 9.3E-16 - T[105-116] 9.3E-16 - T[188-207] 9.3E-16 - T[209-226] 9.3E-16

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RDH11_HUMAN	46.358 %	243	6.32E-79
RDH13_HUMAN	47.134 %	255	1.62E-83
RDH14_HUMAN	49.169 %	263	7.76E-87