Aniseed - Transcript Card

Clone 'cima896698' >
Clone 'cieg004l07' >
Clone 'cidg812o16' >
Clone 'cieg091f02' >
Transcript 'KH2012:KH.C2.104.v2....'

Transcript Model

Transcript Id

KH2012:KH.C2.104.v2.A.nonSL3-1

Possible name(s)

RDH13; RDH14

Gene model

KH2012:KH.C2.104

Location

KhC2 [360,921 / 365,755]

Sequences

Amino acid sequence

Length: 308

>KH.C2.104.v2.A.nonSL3-1
MSVSKGWVTSNVTLEGKTALITGANSGIGKETTRELSKRGAKVIMACRDLANAEEVKKSI
IEEFPNAKVEVGKLDLGSLKSVREFAKSVNDNENRLDILINNAGVMCCPQGKTEDGFEMH
LGINHIGHFLLTNLLLDLIKKSAPSRIICTASSGYKRGVMKWDDLMCDKEYVPFNVYANS
KLANCLFARELSRRLEGTGVTCNLIHPGLVLTNLGRHMYGEGRSIGKRILHAITWPIVLL
VFKSPQRGAQSTIFCAVAEELKNTSGKYYNSDSEEEQLLDKALNEDDAQKLWKITEKLCG
LNTDADTA

Nucleotide sequence

Length: 1,229

>KH2012:KH.C2.104.v2.A.nonSL3-1
ATGTCGGTGTCTAAGGGTTGGGTGACCAGCAATGTTACCTTGGAGGGCAAAACTGCCCTC
ATCACTGGTGCTAATTCAGGAATTGGAAAAGAAACAACAAGGGAGCTATCAAAGCGAGGT
GCAAAAGTTATTATGGCGTGCAGAGATCTTGCAAATGCTGAAGAAGTCAAAAAATCTATT
ATTGAAGAATTTCCAAATGCAAAAGTTGAAGTGGGAAAATTAGATTTGGGATCGTTGAAA
TCTGTGAGAGAATTTGCAAAAAGTGTAAATGACAATGAAAATAGATTGGATATTTTAATT
AATAATGCAGGAGTTATGTGTTGCCCTCAAGGCAAGACTGAGGATGGGTTTGAAATGCAC
TTGGGTATCAACCACATTGGACACTTTCTCCTTACAAACCTTTTGTTGGATCTAATAAAA
AAAAGTGCACCAAGTCGAATAATTTGTACTGCATCTTCTGGGTACAAACGTGGTGTGATG
AAATGGGATGATTTAATGTGTGACAAAGAATATGTGCCGTTTAATGTTTATGCCAACAGC
AAGCTAGCAAACTGTTTGTTTGCTCGCGAGTTAAGTCGTCGGCTAGAAGGCACAGGCGTC
ACCTGTAATTTGATTCATCCTGGTTTAGTTCTTACCAACCTTGGTAGGCATATGTATGGG
GAAGGTCGATCAATTGGTAAACGTATCTTACATGCAATAACGTGGCCAATTGTGTTGTTG
GTGTTCAAATCTCCACAGCGAGGAGCACAAAGCACAATATTTTGTGCAGTTGCTGAAGAA
TTGAAAAATACAAGTGGAAAATATTACAACAGCGACAGTGAGGAAGAACAACTGTTGGAT
AAAGCTTTAAATGAAGATGATGCACAAAAGTTGTGGAAAATCACAGAAAAACTGTGTGGA
TTAAATACAGATGCTGATACAGCATAAATATTACTTTTTATAAGAAAATCCCACCTGCAT
GTGCTAATTTATCAGTTGATGGACATGTAAATTTTATATATTTTGCACTCATACCTAATG
GTCTTTTTTTTGCGAGCAGTATTTAGTATTACAGTGGCAAATGGCCGCCAATGTGTTTAG
TATTGTTGCAAAATGTGTCAGGAAATACATTTAAATATTGCATTGCATTTTATATCTTTA
GGCATATCACAATTTTTCCATATACTGTCATAATGAATATAATACTATTTGCATTCTTTT
TTTATATACAACTTATTAATTCTTAACAG

InterProScan

SUPERFAMILY	NAD(P)-bd_dom_sf (IPR036291) - T[13-273] 4.74E-59
Pfam	SDR_fam (IPR002347) - T[17-216] 3.6E-31
PRINTS	SDR_fam (IPR002347) - T[18-35] 8.3E-16 - T[94-105] 8.3E-16 - T[177-196] 8.3E-16 - T[198-215] 8.3E-16

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RDH11_HUMAN	46.358 %	243	2.45E-79
RDH13_HUMAN	48.333 %	254	1.75E-83
RDH14_HUMAN	49.169 %	264	3.58E-87