Aniseed - Transcript Card

Transcript 'KH2012:KH.C2.104.v2....'

Transcript Model

Transcript Id

KH2012:KH.C2.104.v2.A.nonSL4-1

Possible name(s)

RDH13; RDH14

Gene model

KH2012:KH.C2.104

Location

KhC2 [360,921 / 365,779]

Sequences

Amino acid sequence

Length: 316

>KH.C2.104.v2.A.nonSL4-1
NVVWCSVIMSVSKGWVTSNVTLEGKTALITGANSGIGKETTRELSKRGAKVIMACRDLAN
AEEVKKSIIEEFPNAKVEVGKLDLGSLKSVREFAKSVNDNENRLDILINNAGVMCCPQGK
TEDGFEMHLGINHIGHFLLTNLLLDLIKKSAPSRIICTASSGYKRGVMKWDDLMCDKEYV
PFNVYANSKLANCLFARELSRRLEGTGVTCNLIHPGLVLTNLGRHMYGEGRSIGKRILHA
ITWPIVLLVFKSPQRGAQSTIFCAVAEELKNTSGKYYNSDSEEEQLLDKALNEDDAQKLW
KITEKLCGLNTDADTA

Nucleotide sequence

Length: 1,253

>KH2012:KH.C2.104.v2.A.nonSL4-1
AACGTCGTCTGGTGCAGTGTTATTATGTCGGTGTCTAAGGGTTGGGTGACCAGCAATGTT
ACCTTGGAGGGCAAAACTGCCCTCATCACTGGTGCTAATTCAGGAATTGGAAAAGAAACA
ACAAGGGAGCTATCAAAGCGAGGTGCAAAAGTTATTATGGCGTGCAGAGATCTTGCAAAT
GCTGAAGAAGTCAAAAAATCTATTATTGAAGAATTTCCAAATGCAAAAGTTGAAGTGGGA
AAATTAGATTTGGGATCGTTGAAATCTGTGAGAGAATTTGCAAAAAGTGTAAATGACAAT
GAAAATAGATTGGATATTTTAATTAATAATGCAGGAGTTATGTGTTGCCCTCAAGGCAAG
ACTGAGGATGGGTTTGAAATGCACTTGGGTATCAACCACATTGGACACTTTCTCCTTACA
AACCTTTTGTTGGATCTAATAAAAAAAAGTGCACCAAGTCGAATAATTTGTACTGCATCT
TCTGGGTACAAACGTGGTGTGATGAAATGGGATGATTTAATGTGTGACAAAGAATATGTG
CCGTTTAATGTTTATGCCAACAGCAAGCTAGCAAACTGTTTGTTTGCTCGCGAGTTAAGT
CGTCGGCTAGAAGGCACAGGCGTCACCTGTAATTTGATTCATCCTGGTTTAGTTCTTACC
AACCTTGGTAGGCATATGTATGGGGAAGGTCGATCAATTGGTAAACGTATCTTACATGCA
ATAACGTGGCCAATTGTGTTGTTGGTGTTCAAATCTCCACAGCGAGGAGCACAAAGCACA
ATATTTTGTGCAGTTGCTGAAGAATTGAAAAATACAAGTGGAAAATATTACAACAGCGAC
AGTGAGGAAGAACAACTGTTGGATAAAGCTTTAAATGAAGATGATGCACAAAAGTTGTGG
AAAATCACAGAAAAACTGTGTGGATTAAATACAGATGCTGATACAGCATAAATATTACTT
TTTATAAGAAAATCCCACCTGCATGTGCTAATTTATCAGTTGATGGACATGTAAATTTTA
TATATTTTGCACTCATACCTAATGGTCTTTTTTTTGCGAGCAGTATTTAGTATTACAGTG
GCAAATGGCCGCCAATGTGTTTAGTATTGTTGCAAAATGTGTCAGGAAATACATTTAAAT
ATTGCATTGCATTTTATATCTTTAGGCATATCACAATTTTTCCATATACTGTCATAATGA
ATATAATACTATTTGCATTCTTTTTTTATATACAACTTATTAATTCTTAACAG

InterProScan

SUPERFAMILY	NAD(P)-bd_dom_sf (IPR036291) - T[21-281] 5.23E-59
Pfam	SDR_fam (IPR002347) - T[25-224] 3.8E-31
PRINTS	SDR_fam (IPR002347) - T[26-43] 9.0E-16 - T[102-113] 9.0E-16 - T[185-204] 9.0E-16 - T[206-223] 9.0E-16

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RDH11_HUMAN	46.358 %	243	4.6E-79
RDH13_HUMAN	48.333 %	254	2.41E-83
RDH14_HUMAN	49.169 %	263	7.39E-87