Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C2.104.v2.A.nonSL7-1

Possible name(s)

RDH13; RDH14

Gene model

KH2012:KH.C2.104

Location

KhC2 [360,921 / 365,827]

Sequences

Amino acid sequence

Length: 327

>KH.C2.104.v2.A.nonSL7-1
SQLDQQQCFLSNVVWCSVIMSVSKGWVTSNVTLEGKTALITGANSGIGKETTRELSKRGA
KVIMACRDLANAEEVKKSIIEEFPNAKVEVGKLDLGSLKSVREFAKSVNDNENRLDILIN
NAGVMCCPQGKTEDGFEMHLGINHIGHFLLTNLLLDLIKKSAPSRIICTASSGYKRGVMK
WDDLMCDKEYVPFNVYANSKLANCLFARELSRRLEGTGVTCNLIHPGLVLTNLGRHMYGE
GRSIGKRILHAITWPIVLLVFKSPQRGAQSTIFCAVAEELKNTSGKYYNSDSEEEQLLDK
ALNEDDAQKLWKITEKLCGLNTDADTA

Nucleotide sequence

Length: 1,301

>KH2012:KH.C2.104.v2.A.nonSL7-1
AATTGTGACGATTAATCCCAACTTGATCAACAACAATGTTTCTTGTCTAACGTCGTCTGG
TGCAGTGTTATTATGTCGGTGTCTAAGGGTTGGGTGACCAGCAATGTTACCTTGGAGGGC
AAAACTGCCCTCATCACTGGTGCTAATTCAGGAATTGGAAAAGAAACAACAAGGGAGCTA
TCAAAGCGAGGTGCAAAAGTTATTATGGCGTGCAGAGATCTTGCAAATGCTGAAGAAGTC
AAAAAATCTATTATTGAAGAATTTCCAAATGCAAAAGTTGAAGTGGGAAAATTAGATTTG
GGATCGTTGAAATCTGTGAGAGAATTTGCAAAAAGTGTAAATGACAATGAAAATAGATTG
GATATTTTAATTAATAATGCAGGAGTTATGTGTTGCCCTCAAGGCAAGACTGAGGATGGG
TTTGAAATGCACTTGGGTATCAACCACATTGGACACTTTCTCCTTACAAACCTTTTGTTG
GATCTAATAAAAAAAAGTGCACCAAGTCGAATAATTTGTACTGCATCTTCTGGGTACAAA
CGTGGTGTGATGAAATGGGATGATTTAATGTGTGACAAAGAATATGTGCCGTTTAATGTT
TATGCCAACAGCAAGCTAGCAAACTGTTTGTTTGCTCGCGAGTTAAGTCGTCGGCTAGAA
GGCACAGGCGTCACCTGTAATTTGATTCATCCTGGTTTAGTTCTTACCAACCTTGGTAGG
CATATGTATGGGGAAGGTCGATCAATTGGTAAACGTATCTTACATGCAATAACGTGGCCA
ATTGTGTTGTTGGTGTTCAAATCTCCACAGCGAGGAGCACAAAGCACAATATTTTGTGCA
GTTGCTGAAGAATTGAAAAATACAAGTGGAAAATATTACAACAGCGACAGTGAGGAAGAA
CAACTGTTGGATAAAGCTTTAAATGAAGATGATGCACAAAAGTTGTGGAAAATCACAGAA
AAACTGTGTGGATTAAATACAGATGCTGATACAGCATAAATATTACTTTTTATAAGAAAA
TCCCACCTGCATGTGCTAATTTATCAGTTGATGGACATGTAAATTTTATATATTTTGCAC
TCATACCTAATGGTCTTTTTTTTGCGAGCAGTATTTAGTATTACAGTGGCAAATGGCCGC
CAATGTGTTTAGTATTGTTGCAAAATGTGTCAGGAAATACATTTAAATATTGCATTGCAT
TTTATATCTTTAGGCATATCACAATTTTTCCATATACTGTCATAATGAATATAATACTAT
TTGCATTCTTTTTTTATATACAACTTATTAATTCTTAACAG

InterProScan

SUPERFAMILY	NAD(P)-bd_dom_sf (IPR036291) - T[32-292] 6.02E-59
Pfam	SDR_fam (IPR002347) - T[36-235] 4.2E-31
PRINTS	SDR_fam (IPR002347) - T[37-54] 1.0E-15 - T[113-124] 1.0E-15 - T[196-215] 1.0E-15 - T[217-234] 1.0E-15

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RDH11_HUMAN	46.358 %	243	6.73E-79
RDH13_HUMAN	47.134 %	255	1.68E-83
RDH14_HUMAN	49.169 %	264	7.0E-87