- Transcript 'KH2012:KH.C12.72.v2....' >
- Transcript 'KH2012:KH.L153.26.v1...' >
- Transcript 'KH2012:KH.C3.228.v1....' >
- Transcript 'KH2012:KH.C2.1104.v1...'
Transcript Model
Transcript Id
KH2012:KH.C2.1104.v1.A.SL1-1
Possible name(s)
PCDH11X; PCDH11Y; PCDH9
Gene model
Location
KhC2 [1,761,839 / 1,773,920]
Amino acid sequence
Length: 1,270
>KH.C2.1104.v1.A.SL1-1
VINQYLMEISLFVTFLSLLFLPVCQSLNLAYVLKEDTGQGDYVGNIPQELNFPILEPNQV
QRTYQVLTGGDKIHVDPNTGDLNTAIRLDREKLCPENPPTCTIDVEVAVLPSDYFQLIKV
QFTLEDLNDNTPTFPSPIIVKDISESAFVGTLIRLDSATDPDLGANSIDHYDLTSTDVSS
DESPLSYFELLVVENIDGTKIPQLQLVKQLDREVISSYELQLKAIDGGTPSLTGTATIKI
NVSDSNDNQPIFAESRYIVEVPENRPAGFVVVRVEATDLDSGSNADLSYTFPGVVSAQDK
AIFQLNPDTGAISIKAPGLDYENRTIHHLTVEARDKGPNSSPAYTTVTVKVIDINDEYPQ
FSIKFMEYLDPASQDRRPTSDAATETPDTEVVFVKEDMARGSYIAFVTITDRDTGLNGNV
SCRLKESDGFELFVIDRKDNRYLIKTKKELDRETQPSYNLEIDAWDFGNPSLTNSTTIAI
ELEDVNDNPPKFRRGGYRVNVKETINGGDRVTQVEAADPDDGLNARVNYTIWPTNTSQTL
PFVIEPLTGIVRFATNAEPLDAENSTGPFILTVTATDNGIPSHSATTSLTVYENDNSPKF
SKSQYSFPVKEHLKRGAYVGHVFATDRDINKDTNAKVSYSFVDSDENIPFFINHVTGMIT
YDGEQSELDREVLQSQPYLLRVEARDSGDRPRKDYATVQIFLTDINDNSPSISYPNVTRD
VAFIYFKDAVHPPRTQPVVITRVVATDPDEQENGRVHYAIAAGNVYDYFTINMNSGEVSL
NLKQKKSFKKMKRGCHVIEILVSDMGKPKALSTTAWVNIYVTDKRPRKMNVTKALKSCMN
NTFYPILHTPSTDIGKAGADDLALILIICFSALLLIMLIIMIVMLVKYKCCCCSKSKMSR
SYNCQKANNIYNDDIFQRRMSIDKQAGSQSSLAQPNWSNMQHQMEESDPLHDKNIHGQED
LSEGSVVSQYSGKDSGTGDSMPSEAHNTGYRVPYGARNAQPNYISHPANKSYSSHTGNMV
TEKPLYGMGNPPLHSRSANSFSSRCTNDCHIHGHGDNCWMPDTEYVEGIHYADHGMSGFI
CPMHGEGCSTKEYCEMNQGYMVQDNNLHMHGQDYMMPNNMYHMGDGLNDPSYPMHPGMHM
GYDLGPNRPLQTFNPDHMSVEKAYVNLQKRGSMVNPADEPKLGYAAHPQHYEHPMYVDNC
DDINNTKLIHGHEDVGYNMEHQLPPHSMPQQYGNRVNLSDDGYKPNDGLTMIKEELDAED
VVAEIDDLLQ
Nucleotide sequence
Length: 4,495
>KH2012:KH.C2.1104.v1.A.SL1-1
GGTGATAAATCAGTATTTAATGGAAATAAGTTTATTTGTCACATTTCTGAGTCTTCTGTT
TCTGCCTGTTTGTCAATCTCTGAACCTTGCATATGTTCTAAAAGAAGACACAGGACAAGG
CGACTATGTGGGGAATATCCCCCAAGAGCTCAATTTTCCAATACTGGAACCAAACCAGGT
GCAAAGAACATATCAGGTTTTAACAGGCGGGGACAAGATTCATGTTGATCCAAATACTGG
GGACCTTAACACTGCAATCAGATTGGACAGGGAAAAGCTATGTCCTGAAAACCCACCTAC
TTGTACCATAGATGTTGAGGTGGCCGTGTTACCATCAGATTACTTTCAACTTATTAAAGT
TCAATTTACGTTAGAGGACCTCAATGATAATACGCCTACTTTTCCTTCGCCAATTATTGT
AAAGGACATTTCGGAAAGTGCCTTCGTTGGGACGTTAATCCGACTAGACAGTGCTACTGA
TCCCGATTTAGGTGCAAACTCAATCGATCATTATGACTTAACGAGCACCGATGTAAGCTC
TGATGAATCACCTCTCTCCTATTTCGAACTCTTGGTCGTAGAAAATATTGATGGGACGAA
AATCCCGCAGTTACAGCTGGTCAAACAACTTGATAGGGAAGTAATCTCCTCATATGAGCT
GCAGCTGAAAGCAATTGATGGTGGAACTCCCTCTTTAACAGGCACAGCCACCATTAAAAT
TAATGTGAGCGACTCAAATGACAATCAACCGATTTTCGCGGAAAGTAGATACATTGTTGA
AGTTCCTGAAAATCGCCCTGCAGGTTTTGTTGTGGTTCGAGTTGAAGCAACAGACTTGGA
CAGTGGCTCAAATGCTGATTTATCCTACACCTTTCCTGGTGTAGTAAGCGCTCAGGACAA
AGCTATTTTTCAGTTGAACCCTGATACCGGTGCAATTAGCATAAAAGCACCGGGACTAGA
TTATGAAAACAGAACCATCCATCACCTTACAGTGGAAGCGAGAGACAAAGGGCCAAACTC
TTCCCCTGCCTACACAACGGTGACTGTGAAAGTAATTGACATAAATGATGAATACCCCCA
ATTCTCCATTAAGTTTATGGAATACTTGGACCCTGCCTCTCAAGACCGCAGGCCTACCTC
TGATGCTGCTACTGAAACACCAGATACTGAAGTTGTGTTTGTAAAAGAGGATATGGCTCG
TGGAAGTTACATTGCATTTGTGACTATCACGGATCGTGATACCGGCCTCAATGGTAACGT
GTCATGCAGATTAAAAGAATCTGATGGTTTTGAGCTCTTCGTAATTGATCGGAAGGATAA
TAGATACCTGATCAAAACGAAAAAGGAGCTTGACAGAGAGACACAGCCATCATACAACCT
CGAGATTGATGCTTGGGACTTTGGGAATCCTTCTCTCACAAACAGCACAACTATAGCTAT
TGAACTCGAAGACGTTAACGACAACCCACCAAAATTTAGACGTGGAGGTTACAGAGTAAA
TGTGAAAGAGACAATCAATGGTGGAGACAGAGTTACTCAAGTTGAAGCAGCTGATCCTGA
CGATGGTTTGAATGCAAGAGTTAACTACACAATTTGGCCAACTAACACAAGCCAAACTCT
TCCCTTTGTTATTGAGCCCTTAACTGGAATTGTGAGATTTGCAACGAATGCTGAACCTCT
GGATGCAGAAAACTCTACCGGTCCTTTCATATTAACTGTAACTGCAACAGATAATGGAAT
ACCAAGTCATTCAGCTACTACATCACTGACGGTATATGAAAACGACAACAGTCCTAAATT
CTCCAAGTCTCAATACTCGTTCCCAGTGAAGGAGCATTTAAAACGTGGTGCATATGTGGG
CCATGTGTTCGCAACAGACAGAGATATAAATAAAGACACAAATGCAAAAGTCTCATACAG
CTTTGTTGACTCAGATGAAAATATCCCGTTCTTTATAAATCATGTCACAGGTATGATAAC
TTACGATGGTGAGCAGAGTGAGTTAGATCGTGAAGTTCTACAATCTCAACCTTACTTGCT
ACGTGTGGAAGCGCGTGACAGTGGTGATAGACCACGCAAAGATTATGCAACAGTTCAAAT
TTTCTTGACAGACATAAACGACAATTCTCCTTCCATTTCGTACCCGAATGTTACCCGAGA
TGTTGCCTTTATTTATTTCAAGGACGCCGTTCACCCACCAAGAACACAGCCTGTAGTTAT
CACACGCGTGGTAGCAACTGATCCTGACGAGCAGGAAAATGGGAGAGTCCATTACGCAAT
TGCTGCCGGTAACGTGTATGATTACTTCACCATAAATATGAACTCTGGCGAAGTCAGTTT
AAATCTCAAGCAAAAAAAGTCGTTCAAAAAAATGAAACGTGGATGTCATGTGATAGAGAT
ATTGGTCAGTGATATGGGAAAACCAAAAGCTCTCAGCACGACAGCTTGGGTCAACATATA
CGTGACTGACAAGCGGCCACGTAAAATGAATGTAACCAAAGCACTCAAGTCTTGTATGAA
CAACACATTCTACCCCATCCTACATACACCAAGCACTGACATAGGAAAAGCTGGGGCCGA
TGATCTTGCATTGATTCTTATCATATGTTTCAGTGCCTTGCTGCTTATCATGTTAATTAT
AATGATTGTTATGTTGGTGAAATACAAATGTTGCTGTTGTAGTAAAAGTAAAATGTCGCG
CTCCTACAACTGCCAGAAAGCAAACAATATATACAACGATGACATTTTCCAGCGTAGGAT
GTCTATAGATAAACAAGCAGGTAGTCAATCCTCACTGGCGCAACCAAATTGGTCAAACAT
GCAACATCAAATGGAAGAGTCCGATCCACTACATGATAAGAACATACACGGACAAGAAGA
TTTATCAGAAGGCAGCGTGGTTTCTCAGTACAGCGGTAAAGACAGTGGAACTGGTGATAG
CATGCCAAGTGAAGCCCACAACACTGGGTACCGTGTACCTTATGGAGCTCGAAATGCCCA
GCCAAACTATATCTCCCACCCAGCCAACAAATCATATTCATCTCATACAGGAAACATGGT
CACTGAAAAGCCATTGTATGGAATGGGGAATCCACCACTTCATTCACGTAGTGCTAATTC
ATTTTCATCACGATGTACGAATGATTGTCATATACATGGACATGGGGACAACTGCTGGAT
GCCAGACACAGAATATGTTGAAGGAATCCATTATGCTGACCATGGTATGAGTGGCTTCAT
CTGCCCAATGCATGGCGAAGGTTGCTCTACAAAGGAATATTGTGAAATGAACCAAGGATA
CATGGTCCAGGATAACAACTTACATATGCATGGGCAGGACTACATGATGCCTAACAACAT
GTACCATATGGGGGATGGTTTGAATGATCCAAGTTACCCCATGCACCCTGGGATGCATAT
GGGGTACGACCTGGGACCAAACCGGCCACTTCAAACCTTTAACCCTGATCATATGAGTGT
AGAAAAAGCTTACGTCAATCTGCAGAAGCGAGGCTCTATGGTTAACCCAGCAGATGAACC
CAAACTTGGATATGCCGCACATCCCCAACACTACGAACACCCAATGTACGTTGACAACTG
TGACGATATAAACAATACAAAACTTATCCATGGCCACGAGGACGTAGGTTATAACATGGA
GCATCAACTCCCACCACACAGTATGCCACAGCAGTACGGTAACAGAGTGAATCTATCTGA
TGATGGTTACAAACCAAATGATGGGCTCACTATGATCAAGGAGGAATTAGATGCGGAAGA
CGTCGTGGCCGAAATTGACGATTTACTGCAATAAATCGACTTGTAAAGTTTCCTGCTTTA
TTAACATGTTGTGCTGCTGAGCGAAGTGTATGTTTGTGGACAGATCGTTTGTCCTGTAAG
CAAATATGGTTTAAAAATCAATTTTTTAAATAATCAAAACATTTACAATTATGGTAACAG
ATATTTGTTTGCAGTTTAAAACCGCCTTATCTGTCCCAATTACACTTGCTATAATTGCAC
TACTACGTTTTAATGCCGTGCTTTTGTATAATGTTTAACATGTTTTATTTGTCTGAGCTT
TGAACATTTAAAACCTCTCGTTTTATAATCAAGCAGTTTTTATGTCCGAACTCTAAAACG
TTTCTGTCCATCAAAATATGAGTAGCTCCCGTCCTGTAAAAAAAATGTATTTCTTGATTA
ACTGTTTTTGAGATGAGTTTTTTTTCTGTAGATTTTAAGCCAAACTCGTGACGAAATTCA
TTTTTGTGTTTTACCTGCACTGCCAGTATTGAAGGTACATTGGTACATACAGCATTCATA
TTAGCGCTACAATTAACCATAGGTACACTTTTGTAATTAAACATCCTTTTTTGTGAAAAA
ATCTCGTTTTTCCCTCTTTGTTGCTTTTTTTGCTCGATATAAAATAACTAACTCGTCATA
TAACATCATCACACCACCAGCCATATATGATATCTATAAAAATATTCACTCTCGA
| Pfam |
Cadherin_N (IPR013164) - T[29-108] 4.6E-10 |
| SMART |
Cadherin (IPR002126) - T[30-132] 0.24 - T[156-250] 1.7E-18 - T[274-359] 1.0E-22 - T[407-490] 1.5E-21 - T[514-598] 1.4E-13 - T[622-710] 4.7E-18 - T[743-826] 6.4E-11 |
| PRINTS |
Cadherin (IPR002126) - T[71-90] 1.8E-29 - T[134-163] 1.8E-29 - T[217-229] 1.8E-29 - T[231-250] 1.8E-29 - T[250-263] 1.8E-29 - T[440-466] 1.8E-29 - T[694-711] 1.8E-29 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[128-244] 1.57E-20 - T[240-371] 1.93E-29 - T[386-492] 9.71E-20 - T[485-592] 4.32E-19 - T[594-704] 9.16E-22 - T[705-823] 1.57E-14 |
| Pfam |
Cadherin (IPR002126) - T[143-242] 7.2E-14 - T[257-351] 7.5E-18 - T[392-482] 1.5E-14 - T[497-591] 1.4E-11 - T[605-702] 7.8E-13 - T[738-822] 1.5E-10 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[240-250] . - T[480-490] . - T[700-710] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PC11Y_HUMAN | 31.319 % | 404 | 1.07E-119 |
| PCDH9_HUMAN | 33.933 % | 411 | 3.5E-123 |
| PC11X_HUMAN | 31.659 % | 404 | 1.17E-119 |