- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C2.2.v1.A....'
Transcript Model
Transcript Id
KH2012:KH.C2.2.v1.A.ND1-1
Possible name(s)
DAW1; SNRNP40; WDR55
Gene model
Location
KhC2 [2,934,155 / 2,936,750]
Amino acid sequence
Length: 291
>KH.C2.2.v1.A.ND1-1
RKLIGELIFLLRLQIALPFLSFSFDRSAPYCLSVIDKNLLATGDDDGTLKVWDLRKGKDA
VMTSEDKFEDYVSDIAVDDKRRLIFAVCGDGTMATFNARQRKFIVHSQNEESDLLCAKVI
KNNNKVLVGSADGPILLYNWNEFAAPSDRFPGHPGPVDCIAKVSEDVVCTGSADGLIRAV
HLLPNRFLGVVGDHHGLPVEKVEATHDGKFIASCSHDNLIKFWSVDHLKSVEVCPREKAI
KQKRTEKMSKSGVGHGKMAFFSDLNNDIDTSTYINSSSSSDELDSDSDDAS
Nucleotide sequence
Length: 1,063
>KH2012:KH.C2.2.v1.A.ND1-1
ATTTTAAGGTAGTGACATAAATTTACAAGTACACCACTTTTATCAATTCCTTAGATGTTT
TGATACTTACCAAGGACCGAACCATGCATTTTGTTTCTTCGGCCACCGGAAACTTAACAC
GAAGAATAGAGGAAACTCATCGGTGAATTAATATTTCTGCTGCGTCTCCAAATTGCATTG
CCGTTTCTCAGCTTTTCTTTTGACAGATCCGCTCCATACTGTCTGTCAGTTATTGATAAA
AATTTACTTGCTACTGGTGATGATGATGGAACGCTTAAGGTGTGGGATTTGCGGAAAGGC
AAAGATGCGGTCATGACCTCGGAAGATAAATTTGAAGATTACGTAAGCGACATTGCTGTT
GACGATAAACGTCGTCTGATCTTCGCTGTCTGTGGAGATGGTACCATGGCAACATTTAAT
GCACGCCAAAGAAAATTCATCGTTCATTCTCAAAACGAAGAAAGTGATCTTTTGTGCGCA
AAAGTTATCAAAAACAATAATAAAGTTCTTGTGGGTTCAGCGGACGGCCCTATTCTACTG
TACAATTGGAATGAGTTTGCTGCCCCATCAGATAGATTCCCAGGTCATCCTGGTCCTGTT
GATTGTATTGCAAAAGTTTCTGAAGATGTCGTCTGCACTGGTTCCGCAGATGGTTTAATC
CGTGCTGTTCACTTACTCCCAAACCGTTTTCTTGGTGTCGTTGGTGACCACCATGGCTTA
CCTGTGGAAAAAGTTGAAGCAACGCACGACGGAAAGTTTATAGCAAGTTGTTCACATGAT
AACTTAATTAAATTTTGGAGTGTAGACCATTTGAAGTCAGTCGAGGTCTGTCCTCGTGAA
AAAGCTATCAAGCAGAAGAGAACAGAAAAGATGTCAAAAAGTGGGGTTGGTCACGGCAAA
ATGGCATTCTTCTCAGACCTAAATAATGACATCGACACCTCCACATATATTAATTCATCA
TCCAGCTCTGACGAGTTGGACAGTGATTCAGATGACGCAAGTTGACCACCGATTTTTAGT
TCTGTTTTTTTAACTGCCAAAATAAAATAAAAAATTACAGAAA
| SMART |
WD40_repeat (IPR001680) - T[15-53] 0.061 - T[57-97] 34.0 - T[100-139] 40.0 - T[143-181] 6.0 - T[184-224] 0.0089 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[17-259] 1.5E-32 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[22-226] 7.5E-34 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[36-233] 18.563 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[36-62] 10.709 - T[192-233] 9.506 |
| Pfam |
WD40_repeat (IPR001680) - T[36-53] 0.0051 - T[195-224] 0.023 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[40-54] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR55_HUMAN | 42.574 % | 186 | 1.29E-56 |