- Transcript 'KH2012:KH.C2.2.v3.A....'
Transcript Model
Transcript Id
KH2012:KH.C2.2.v3.A.SL2-1
Possible name(s)
DAW1; SNRNP40; WDR55
Gene model
Location
KhC2 [2,933,108 / 2,936,750]
Amino acid sequence
Length: 384
>KH.C2.2.v3.A.SL2-1
IMSDSDSDFSDNSEANDDEKVSRPKQIRGVADFVDLSFHPSTTYTLATANMNGYVRLYNC
VPGEECEQLAKVRVSKKPCRSLSFSYDGEDVLILTKDRTMHFVSSATGNLTRRIEETHRS
APYCLSVIDKNLLATGDDDGTLKVWDLRKGKDAVMTSEDKFEDYVSDIAVDDKRRLIFAV
CGDGTMATFNARQRKFIVHSQNEESDLLCAKVIKNNNKVLVGSADGPILLYNWNEFAAPS
DRFPGHPGPVDCIAKVSEDVVCTGSADGLIRAVHLLPNRFLGVVGDHHGLPVEKVEATHD
GKFIASCSHDNLIKFWSVDHLKSVEVCPREKAIKQKRTEKMSKSGVGHGKMAFFSDLNND
IDTSTYINSSSSSDELDSDSDDAS
Nucleotide sequence
Length: 1,266
>KH2012:KH.C2.2.v3.A.SL2-1
AACATCAGTGTAGTAAATATTTGGTAAAACACAGTTAAACTGACTTTTCATAAATAATGA
GCGATTCCGATTCTGATTTTTCTGACAATAGCGAAGCCAATGATGATGAAAAGGTTTCAA
GACCAAAGCAGATTAGAGGAGTTGCAGACTTTGTTGATCTCTCATTCCACCCCTCCACTA
CTTACACACTCGCTACTGCGAATATGAATGGATATGTTAGACTATATAACTGCGTTCCTG
GTGAAGAATGTGAACAACTGGCAAAAGTTCGGGTCAGCAAGAAACCTTGCAGAAGTCTTT
CCTTCTCATATGACGGCGAAGATGTTTTGATACTTACCAAGGACCGAACCATGCATTTTG
TTTCTTCGGCCACCGGAAACTTAACACGAAGAATAGAGGAAACTCATCGATCCGCTCCAT
ACTGTCTGTCAGTTATTGATAAAAATTTACTTGCTACTGGTGATGATGATGGAACGCTTA
AGGTGTGGGATTTGCGGAAAGGCAAAGATGCGGTCATGACCTCGGAAGATAAATTTGAAG
ATTACGTAAGCGACATTGCTGTTGACGATAAACGTCGTCTGATCTTCGCTGTCTGTGGAG
ATGGTACCATGGCAACATTTAATGCACGCCAAAGAAAATTCATCGTTCATTCTCAAAACG
AAGAAAGTGATCTTTTGTGCGCAAAAGTTATCAAAAACAATAATAAAGTTCTTGTGGGTT
CAGCGGACGGCCCTATTCTACTGTACAATTGGAATGAGTTTGCTGCCCCATCAGATAGAT
TCCCAGGTCATCCTGGTCCTGTTGATTGTATTGCAAAAGTTTCTGAAGATGTCGTCTGCA
CTGGTTCCGCAGATGGTTTAATCCGTGCTGTTCACTTACTCCCAAACCGTTTTCTTGGTG
TCGTTGGTGACCACCATGGCTTACCTGTGGAAAAAGTTGAAGCAACGCACGACGGAAAGT
TTATAGCAAGTTGTTCACATGATAACTTAATTAAATTTTGGAGTGTAGACCATTTGAAGT
CAGTCGAGGTCTGTCCTCGTGAAAAAGCTATCAAGCAGAAGAGAACAGAAAAGATGTCAA
AAAGTGGGGTTGGTCACGGCAAAATGGCATTCTTCTCAGACCTAAATAATGACATCGACA
CCTCCACATATATTAATTCATCATCCAGCTCTGACGAGTTGGACAGTGATTCAGATGACG
CAAGTTGACCACCGATTTTTAGTTCTGTTTTTTTAACTGCCAAAATAAAATAAAAAATTA
CAGAAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[2-201] 7.1E-24 - T[202-381] 6.6E-18 |
| SMART |
WD40_repeat (IPR001680) - T[20-59] 15.0 - T[65-104] 68.0 - T[107-146] 6.5E-5 - T[150-190] 34.0 - T[193-232] 40.0 - T[236-274] 6.0 - T[277-317] 0.0089 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[35-319] 3.16E-48 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[72-326] 19.828 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[129-155] 10.709 - T[285-326] 9.506 |
| Pfam |
WD40_repeat (IPR001680) - T[129-146] 0.0054 - T[288-317] 0.033 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[133-147] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR55_HUMAN | 36.923 % | 236 | 8.51E-75 |