- Transcript 'KH2012:KH.C9.261.v1....' >
- Transcript 'KH2012:KH.C12.455.v1...' >
- EST 'FF783534.1' >
- Transcript 'KH2012:KH.C2.274.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.274.v1.A.SL1-1
Possible name(s)
DDX6; EIF4A1; EIF4A3
Gene model
Location
KhC2 [1,116,674 / 1,119,213]
Amino acid sequence
Length: 493
>KH.C2.274.v1.A.SL1-1
SCYSDKIFKKTLSSLVSLPTVLNTFQVIGKSPMANIAHSSHNNNSVLNQGKLGGPRSGPI
NSKSMSKEKSVHSGQVGEGEDWKANLNRPPVDNRQKTTDVTSTKGVEFEDFCLKRELLMG
IFEKGWEKPSPIQEESIPIALSGRDVLARAKNGTGKSGAYLIPMLGRCDLNKDHIQALVL
VPTRELALQTSQIAIELSRHMGALNVMVTTGGTNLRDDIMRLENSVHIIVATPGRILDLI
NKRIAKVDHCNMIVLDEADKLLSQDFKQMMDNIVTQLPVSRQILLFSATFPITVKDFMLK
HMKKPYEINLMEELTLKGVSQFYAYVEEKKKVHCLNTLFSKLQINQSIIFCNSTHRVELL
AKKITELGYSCFYIHARMKQEYRNRVFHDFRQGMCRNLVCSDLFTRGIDIQAVNVVINFD
FPKMPETYLHRIGRSGRYGHLGLAINLITYDDRFSLARIEEELKTDIKPIPPVIDKSLYV
AEFSKEENDESGK
Nucleotide sequence
Length: 2,539
>KH2012:KH.C2.274.v1.A.SL1-1
ATTATATAATACATGTTAAGCCAATAAAGCTGTTATAGTGATAAAATATTCAAGAAAACA
CTTTCGTCTTTGGTTAGTTTACCTACTGTTTTGAATACGTTTCAAGTGATTGGAAAATCG
CCCATGGCTAACATAGCACATTCAAGCCATAACAATAACTCAGTTTTGAACCAAGGCAAA
CTTGGTGGCCCCAGAAGTGGCCCAATAAACTCTAAGTCCATGTCAAAGGAAAAGTCGGTG
CACTCCGGACAAGTTGGTGAAGGGGAGGATTGGAAAGCAAATCTGAACAGACCTCCGGTC
GACAACCGCCAGAAAACCACTGATGTTACCTCAACAAAAGGTGTAGAATTTGAAGACTTC
TGTCTGAAGCGTGAACTCTTGATGGGCATATTTGAAAAAGGTTGGGAGAAGCCTTCCCCG
ATACAAGAAGAAAGCATTCCAATTGCTCTGTCTGGAAGAGATGTGTTGGCAAGAGCAAAA
AATGGAACCGGAAAATCTGGCGCGTACCTTATTCCCATGCTGGGTCGCTGTGATTTAAAT
AAAGATCACATTCAAGCATTGGTTCTTGTTCCTACACGAGAACTTGCCTTGCAAACATCT
CAAATTGCCATTGAATTAAGCAGGCACATGGGAGCCCTGAATGTTATGGTGACAACTGGT
GGAACGAATCTTCGTGATGACATCATGAGATTAGAAAACAGCGTTCATATTATCGTCGCA
ACACCAGGCCGTATATTAGATTTGATTAACAAACGCATTGCCAAAGTAGATCATTGCAAC
ATGATTGTACTGGATGAAGCAGACAAACTTCTGTCCCAAGATTTTAAACAAATGATGGAT
AACATTGTCACACAACTCCCTGTAAGCCGACAAATTCTTCTTTTCTCTGCTACCTTCCCC
ATTACCGTCAAAGATTTTATGCTGAAGCACATGAAGAAACCCTACGAGATAAACCTCATG
GAAGAACTCACACTGAAAGGGGTGTCCCAGTTTTACGCCTATGTTGAGGAAAAGAAGAAA
GTGCATTGTCTCAACACACTGTTCTCAAAGCTGCAGATCAACCAATCAATTATTTTCTGC
AACTCAACACATAGAGTCGAGCTTCTTGCGAAAAAGATAACAGAGCTCGGTTACTCCTGC
TTCTACATTCATGCACGAATGAAACAAGAGTACAGAAACCGTGTCTTCCATGATTTTCGG
CAGGGCATGTGCCGAAACCTCGTATGCAGCGACTTGTTCACTCGTGGCATCGACATTCAA
GCAGTGAACGTCGTCATCAACTTTGACTTTCCAAAAATGCCCGAGACTTACCTGCATCGT
ATCGGACGCTCGGGAAGATATGGCCATCTTGGTTTGGCCATCAACCTCATCACATACGAT
GACCGTTTCAGCTTAGCGAGAATTGAGGAAGAACTGAAGACAGATATCAAGCCAATCCCA
CCTGTGATCGACAAATCACTTTACGTTGCCGAATTTTCCAAGGAAGAGAATGATGAAAGT
GGAAAGTAATTGACAAGTCTTGAGAAATATGTTACGATGTACAATTCATACGATAACTCA
AGAGACGTTTCTATTGATGAAACTGTTATGATAAGATCATCAATTTTCCTTAAACTACTA
AAGCATGGGGGAGGAAGCTTCAAGCTTGGCGCAACTACCACCATGTTTCGTCATTTCAAA
TTATTTTTGCGTGCCACTGAAATGAGTTGCTCGGCATGGTTTATAAATTTATCATTGTAG
TAGCGTAATAGTCTGGGTATGTTGCTTATTGTCTGTGTCAACTTGGCGCGAAATAAATGT
TCTACTTGTCTACTATTAAGCGCCATATTATATTATTCCTGGCAAATGGTAAATCTTTTT
TAAAGCTATTGTCTCCCAGAAACAGTAAAAGCTGAATTTGAAATGTTTTTTTTATTTTGT
TTATTTTTGGGGGGTTATATTGGGTATTTCCCATTCTATTTCTACCTACAATGTAACATT
TGCAGTGGTTTGTTGCATTGTATATACTTTAGCTGTTATTTTAAGATCCAAGTCACATGA
AAACTCTTTAAAGCATTACCATTTATGGTATCTAATATCTATGCTTAAATATAGAGAAGT
TAATGTGTTCCTGTAGCAACAGCAAACTGCTGTCTTTTTTCCTTTTTTAACACTTCATAG
TACGCATATTTACGCATGGTCACATAGTTTCTTTATGGCAATGGAAAAATGTCAACATAG
TACCTGTGGTTTATCTATTCATACTAAACTTAAACAATTCACTCTTAACTCCTACATTAT
TCCTATTAATCATGGTTTAAAATTCTGTTCCAACTTGTAACTGTGTTTATCTATGTTTTA
CTGTGTTGTGTAAATCGCAAACTTAATCGGCCTGTTTGGTGAATGTGTACCATGGGCAGC
ACTGATGGTAGAACAGTGCTTTTAATTTTGTTTCACTTGTACACAAAAGAACGTGCACTG
ATCCAAAAATGCTGGTTAAGTTTGCAACATAAATTTGGCGATAATTCATAAAATTCATTT
GAACAATTAAATTTTTAGA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[106-134] 9.729 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[125-322] 2.2E-53 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[131-296] 1.6E-43 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[137-308] 29.403 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[174-460] 1.69E-67 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[254-262] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[318-478] 23.411 |
| CDD |
Helicase_C (IPR001650) - T[319-447] 1.40155E-37 |
| Pfam |
Helicase_C (IPR001650) - T[332-439] 3.7E-27 |
| SMART |
Helicase_C (IPR001650) - T[358-439] 1.6E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| IF4A3_HUMAN | 38.933 % | 281 | 2.78E-90 |
| IF4A1_HUMAN | 41.417 % | 266 | 2.04E-84 |
| DDX6_HUMAN | 75.644 % | 693 | 0 |