- Clone 'cien60256' >
- Transcript 'KH2012:KH.C3.110.v1....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.C2.274.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.274.v1.A.SL2-1
Possible name(s)
DDX6; EIF4A1; EIF4A3
Gene model
Location
KhC2 [1,116,674 / 1,119,107]
Amino acid sequence
Length: 466
>KH.C2.274.v1.A.SL2-1
IGKSPMANIAHSSHNNNSVLNQGKLGGPRSGPINSKSMSKEKSVHSGQVGEGEDWKANLN
RPPVDNRQKTTDVTSTKGVEFEDFCLKRELLMGIFEKGWEKPSPIQEESIPIALSGRDVL
ARAKNGTGKSGAYLIPMLGRCDLNKDHIQALVLVPTRELALQTSQIAIELSRHMGALNVM
VTTGGTNLRDDIMRLENSVHIIVATPGRILDLINKRIAKVDHCNMIVLDEADKLLSQDFK
QMMDNIVTQLPVSRQILLFSATFPITVKDFMLKHMKKPYEINLMEELTLKGVSQFYAYVE
EKKKVHCLNTLFSKLQINQSIIFCNSTHRVELLAKKITELGYSCFYIHARMKQEYRNRVF
HDFRQGMCRNLVCSDLFTRGIDIQAVNVVINFDFPKMPETYLHRIGRSGRYGHLGLAINL
ITYDDRFSLARIEEELKTDIKPIPPVIDKSLYVAEFSKEENDESGK
Nucleotide sequence
Length: 2,433
>KH2012:KH.C2.274.v1.A.SL2-1
TGATTGGAAAATCGCCCATGGCTAACATAGCACATTCAAGCCATAACAATAACTCAGTTT
TGAACCAAGGCAAACTTGGTGGCCCCAGAAGTGGCCCAATAAACTCTAAGTCCATGTCAA
AGGAAAAGTCGGTGCACTCCGGACAAGTTGGTGAAGGGGAGGATTGGAAAGCAAATCTGA
ACAGACCTCCGGTCGACAACCGCCAGAAAACCACTGATGTTACCTCAACAAAAGGTGTAG
AATTTGAAGACTTCTGTCTGAAGCGTGAACTCTTGATGGGCATATTTGAAAAAGGTTGGG
AGAAGCCTTCCCCGATACAAGAAGAAAGCATTCCAATTGCTCTGTCTGGAAGAGATGTGT
TGGCAAGAGCAAAAAATGGAACCGGAAAATCTGGCGCGTACCTTATTCCCATGCTGGGTC
GCTGTGATTTAAATAAAGATCACATTCAAGCATTGGTTCTTGTTCCTACACGAGAACTTG
CCTTGCAAACATCTCAAATTGCCATTGAATTAAGCAGGCACATGGGAGCCCTGAATGTTA
TGGTGACAACTGGTGGAACGAATCTTCGTGATGACATCATGAGATTAGAAAACAGCGTTC
ATATTATCGTCGCAACACCAGGCCGTATATTAGATTTGATTAACAAACGCATTGCCAAAG
TAGATCATTGCAACATGATTGTACTGGATGAAGCAGACAAACTTCTGTCCCAAGATTTTA
AACAAATGATGGATAACATTGTCACACAACTCCCTGTAAGCCGACAAATTCTTCTTTTCT
CTGCTACCTTCCCCATTACCGTCAAAGATTTTATGCTGAAGCACATGAAGAAACCCTACG
AGATAAACCTCATGGAAGAACTCACACTGAAAGGGGTGTCCCAGTTTTACGCCTATGTTG
AGGAAAAGAAGAAAGTGCATTGTCTCAACACACTGTTCTCAAAGCTGCAGATCAACCAAT
CAATTATTTTCTGCAACTCAACACATAGAGTCGAGCTTCTTGCGAAAAAGATAACAGAGC
TCGGTTACTCCTGCTTCTACATTCATGCACGAATGAAACAAGAGTACAGAAACCGTGTCT
TCCATGATTTTCGGCAGGGCATGTGCCGAAACCTCGTATGCAGCGACTTGTTCACTCGTG
GCATCGACATTCAAGCAGTGAACGTCGTCATCAACTTTGACTTTCCAAAAATGCCCGAGA
CTTACCTGCATCGTATCGGACGCTCGGGAAGATATGGCCATCTTGGTTTGGCCATCAACC
TCATCACATACGATGACCGTTTCAGCTTAGCGAGAATTGAGGAAGAACTGAAGACAGATA
TCAAGCCAATCCCACCTGTGATCGACAAATCACTTTACGTTGCCGAATTTTCCAAGGAAG
AGAATGATGAAAGTGGAAAGTAATTGACAAGTCTTGAGAAATATGTTACGATGTACAATT
CATACGATAACTCAAGAGACGTTTCTATTGATGAAACTGTTATGATAAGATCATCAATTT
TCCTTAAACTACTAAAGCATGGGGGAGGAAGCTTCAAGCTTGGCGCAACTACCACCATGT
TTCGTCATTTCAAATTATTTTTGCGTGCCACTGAAATGAGTTGCTCGGCATGGTTTATAA
ATTTATCATTGTAGTAGCGTAATAGTCTGGGTATGTTGCTTATTGTCTGTGTCAACTTGG
CGCGAAATAAATGTTCTACTTGTCTACTATTAAGCGCCATATTATATTATTCCTGGCAAA
TGGTAAATCTTTTTTAAAGCTATTGTCTCCCAGAAACAGTAAAAGCTGAATTTGAAATGT
TTTTTTTATTTTGTTTATTTTTGGGGGGTTATATTGGGTATTTCCCATTCTATTTCTACC
TACAATGTAACATTTGCAGTGGTTTGTTGCATTGTATATACTTTAGCTGTTATTTTAAGA
TCCAAGTCACATGAAAACTCTTTAAAGCATTACCATTTATGGTATCTAATATCTATGCTT
AAATATAGAGAAGTTAATGTGTTCCTGTAGCAACAGCAAACTGCTGTCTTTTTTCCTTTT
TTAACACTTCATAGTACGCATATTTACGCATGGTCACATAGTTTCTTTATGGCAATGGAA
AAATGTCAACATAGTACCTGTGGTTTATCTATTCATACTAAACTTAAACAATTCACTCTT
AACTCCTACATTATTCCTATTAATCATGGTTTAAAATTCTGTTCCAACTTGTAACTGTGT
TTATCTATGTTTTACTGTGTTGTGTAAATCGCAAACTTAATCGGCCTGTTTGGTGAATGT
GTACCATGGGCAGCACTGATGGTAGAACAGTGCTTTTAATTTTGTTTCACTTGTACACAA
AAGAACGTGCACTGATCCAAAAATGCTGGTTAAGTTTGCAACATAAATTTGGCGATAATT
CATAAAATTCATTTGAACAATTAAATTTTTAGA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[79-107] 9.729 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[98-295] 2.2E-53 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[104-269] 1.4E-43 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[110-281] 29.403 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[147-433] 1.47E-67 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[227-235] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[291-451] 23.411 |
| CDD |
Helicase_C (IPR001650) - T[292-420] 1.41402E-37 |
| Pfam |
Helicase_C (IPR001650) - T[305-412] 3.4E-27 |
| SMART |
Helicase_C (IPR001650) - T[331-412] 1.6E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| IF4A3_HUMAN | 38.933 % | 281 | 1.72E-90 |
| IF4A1_HUMAN | 41.417 % | 265 | 1.52E-84 |
| DDX6_HUMAN | 75.116 % | 692 | 0 |