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  1. Transcript 'KH2012:KH.C11.339.v1...'
  2. Transcript 'KH2012:KH.S555.3.v1....'
  3. Transcript 'Phmamm.CG.MTP2014.S1...'
  4. Transcript 'Moocul.CG.ELv1_2.S11...'
  5. Transcript 'KH2012:KH.C2.274.v1....'

Transcript Model

Transcript Id

KH2012:KH.C2.274.v1.A.SL2-1

Possible name(s)

DDX6; EIF4A1; EIF4A3

Location

KhC2 [1,116,674 / 1,119,107]

Sequences

Amino acid sequence

Length: 466

>KH.C2.274.v1.A.SL2-1
IGKSPMANIAHSSHNNNSVLNQGKLGGPRSGPINSKSMSKEKSVHSGQVGEGEDWKANLN
RPPVDNRQKTTDVTSTKGVEFEDFCLKRELLMGIFEKGWEKPSPIQEESIPIALSGRDVL
ARAKNGTGKSGAYLIPMLGRCDLNKDHIQALVLVPTRELALQTSQIAIELSRHMGALNVM
VTTGGTNLRDDIMRLENSVHIIVATPGRILDLINKRIAKVDHCNMIVLDEADKLLSQDFK
QMMDNIVTQLPVSRQILLFSATFPITVKDFMLKHMKKPYEINLMEELTLKGVSQFYAYVE
EKKKVHCLNTLFSKLQINQSIIFCNSTHRVELLAKKITELGYSCFYIHARMKQEYRNRVF
HDFRQGMCRNLVCSDLFTRGIDIQAVNVVINFDFPKMPETYLHRIGRSGRYGHLGLAINL
ITYDDRFSLARIEEELKTDIKPIPPVIDKSLYVAEFSKEENDESGK

Nucleotide sequence

Length: 2,433

>KH2012:KH.C2.274.v1.A.SL2-1
TGATTGGAAAATCGCCCATGGCTAACATAGCACATTCAAGCCATAACAATAACTCAGTTT
TGAACCAAGGCAAACTTGGTGGCCCCAGAAGTGGCCCAATAAACTCTAAGTCCATGTCAA
AGGAAAAGTCGGTGCACTCCGGACAAGTTGGTGAAGGGGAGGATTGGAAAGCAAATCTGA
ACAGACCTCCGGTCGACAACCGCCAGAAAACCACTGATGTTACCTCAACAAAAGGTGTAG
AATTTGAAGACTTCTGTCTGAAGCGTGAACTCTTGATGGGCATATTTGAAAAAGGTTGGG
AGAAGCCTTCCCCGATACAAGAAGAAAGCATTCCAATTGCTCTGTCTGGAAGAGATGTGT
TGGCAAGAGCAAAAAATGGAACCGGAAAATCTGGCGCGTACCTTATTCCCATGCTGGGTC
GCTGTGATTTAAATAAAGATCACATTCAAGCATTGGTTCTTGTTCCTACACGAGAACTTG
CCTTGCAAACATCTCAAATTGCCATTGAATTAAGCAGGCACATGGGAGCCCTGAATGTTA
TGGTGACAACTGGTGGAACGAATCTTCGTGATGACATCATGAGATTAGAAAACAGCGTTC
ATATTATCGTCGCAACACCAGGCCGTATATTAGATTTGATTAACAAACGCATTGCCAAAG
TAGATCATTGCAACATGATTGTACTGGATGAAGCAGACAAACTTCTGTCCCAAGATTTTA
AACAAATGATGGATAACATTGTCACACAACTCCCTGTAAGCCGACAAATTCTTCTTTTCT
CTGCTACCTTCCCCATTACCGTCAAAGATTTTATGCTGAAGCACATGAAGAAACCCTACG
AGATAAACCTCATGGAAGAACTCACACTGAAAGGGGTGTCCCAGTTTTACGCCTATGTTG
AGGAAAAGAAGAAAGTGCATTGTCTCAACACACTGTTCTCAAAGCTGCAGATCAACCAAT
CAATTATTTTCTGCAACTCAACACATAGAGTCGAGCTTCTTGCGAAAAAGATAACAGAGC
TCGGTTACTCCTGCTTCTACATTCATGCACGAATGAAACAAGAGTACAGAAACCGTGTCT
TCCATGATTTTCGGCAGGGCATGTGCCGAAACCTCGTATGCAGCGACTTGTTCACTCGTG
GCATCGACATTCAAGCAGTGAACGTCGTCATCAACTTTGACTTTCCAAAAATGCCCGAGA
CTTACCTGCATCGTATCGGACGCTCGGGAAGATATGGCCATCTTGGTTTGGCCATCAACC
TCATCACATACGATGACCGTTTCAGCTTAGCGAGAATTGAGGAAGAACTGAAGACAGATA
TCAAGCCAATCCCACCTGTGATCGACAAATCACTTTACGTTGCCGAATTTTCCAAGGAAG
AGAATGATGAAAGTGGAAAGTAATTGACAAGTCTTGAGAAATATGTTACGATGTACAATT
CATACGATAACTCAAGAGACGTTTCTATTGATGAAACTGTTATGATAAGATCATCAATTT
TCCTTAAACTACTAAAGCATGGGGGAGGAAGCTTCAAGCTTGGCGCAACTACCACCATGT
TTCGTCATTTCAAATTATTTTTGCGTGCCACTGAAATGAGTTGCTCGGCATGGTTTATAA
ATTTATCATTGTAGTAGCGTAATAGTCTGGGTATGTTGCTTATTGTCTGTGTCAACTTGG
CGCGAAATAAATGTTCTACTTGTCTACTATTAAGCGCCATATTATATTATTCCTGGCAAA
TGGTAAATCTTTTTTAAAGCTATTGTCTCCCAGAAACAGTAAAAGCTGAATTTGAAATGT
TTTTTTTATTTTGTTTATTTTTGGGGGGTTATATTGGGTATTTCCCATTCTATTTCTACC
TACAATGTAACATTTGCAGTGGTTTGTTGCATTGTATATACTTTAGCTGTTATTTTAAGA
TCCAAGTCACATGAAAACTCTTTAAAGCATTACCATTTATGGTATCTAATATCTATGCTT
AAATATAGAGAAGTTAATGTGTTCCTGTAGCAACAGCAAACTGCTGTCTTTTTTCCTTTT
TTAACACTTCATAGTACGCATATTTACGCATGGTCACATAGTTTCTTTATGGCAATGGAA
AAATGTCAACATAGTACCTGTGGTTTATCTATTCATACTAAACTTAAACAATTCACTCTT
AACTCCTACATTATTCCTATTAATCATGGTTTAAAATTCTGTTCCAACTTGTAACTGTGT
TTATCTATGTTTTACTGTGTTGTGTAAATCGCAAACTTAATCGGCCTGTTTGGTGAATGT
GTACCATGGGCAGCACTGATGGTAGAACAGTGCTTTTAATTTTGTTTCACTTGTACACAA
AAGAACGTGCACTGATCCAAAAATGCTGGTTAAGTTTGCAACATAAATTTGGCGATAATT
CATAAAATTCATTTGAACAATTAAATTTTTAGA

InterProScan

ProSiteProfiles
RNA_helicase_DEAD_Q_motif (IPR014014) - T[79-107] 9.729
SMART
Helicase_ATP-bd (IPR014001) - T[98-295] 2.2E-53
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[104-269] 1.4E-43
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[110-281] 29.403
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[147-433] 1.47E-67
ProSitePatterns
RNA-helicase_DEAD-box_CS (IPR000629) - T[227-235] .
ProSiteProfiles
Helicase_C (IPR001650) - T[291-451] 23.411
CDD
Helicase_C (IPR001650) - T[292-420] 1.41402E-37
Pfam
Helicase_C (IPR001650) - T[305-412] 3.4E-27
SMART
Helicase_C (IPR001650) - T[331-412] 1.6E-28

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
IF4A3_HUMAN 38.933 % 281 1.72E-90
IF4A1_HUMAN 41.417 % 265 1.52E-84
DDX6_HUMAN 75.116 % 692 0