- Transcript 'KH2012:KH.C2.598.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.598.v1.A.SL1-2
Possible name(s)
BIVM-ERCC5; FEN1; GEN1
Gene model
Location
KhC2 [4,148,992 / 4,153,971]
Amino acid sequence
Length: 591
>KH.C2.598.v1.A.SL1-2
VCFVGFFNFLWAMGVQGLWDILQEVKTTKKLCDLKDRTYAVDLATWICEAESVAALKHAI
AKPYLRNLFFRVITFTRNGTRLIFVTDGKAPELKWKTMAHRMDVRQEVQKGTNVSHGSRS
RLNARFNECCQLLDQLGIPWIKSEGEAEATCAALNSVGVVDGCMTNDSDTFLYGAKSVYR
NLSMTTDRNDIDVECYELCDIESKLQLNRKSLIALGLLLGCDYSPQGVPGVGKKQAIMLL
SSWKNIDPLEKLKAWKSESVLSPTVTKKPTHCSACSHIGSKRDHKKNGCDICGSECGSET
ALPVDCSCEWHVLENEQRKHNLENGIKKKALLVENFPDPKIIREFTRNKLGSQPLNHLSP
RQPTLFGAVQYLCEKLEWQVKYAVDKVLPLLTYWLMQNEGTINEISFQRIVRTRIKDRVP
SFEVKWFLSGIDDVTEAVTLEPQELVTKKFPEASKNFFAEQQAKKKKTKSKGAKQQKIPA
AKMTDFYKITKTTELTSKPLITKGNDLKNTSTTPTAANTAAKNSEISPIQSEYVKNDLKR
SSRPTSSCTVVSKSNDDDDVIFVSESSPAKQGKLSSIVSHKTSCISKKLLF
Nucleotide sequence
Length: 2,056
>KH2012:KH.C2.598.v1.A.SL1-2
CAATAAGTTTGCTTTGTAGGTTTTTTTAATTTTTTGTGGGCGATGGGTGTTCAGGGTTTG
TGGGATATTCTACAAGAAGTTAAAACCACAAAAAAGTTGTGTGATTTAAAAGACCGGACG
TACGCTGTTGACCTAGCTACATGGATTTGCGAAGCGGAGTCGGTTGCCGCGTTAAAACAT
GCCATTGCCAAGCCCTACTTAAGAAATCTATTTTTTCGTGTGATCACATTTACGAGAAAT
GGGACTCGCCTGATTTTCGTAACGGACGGAAAAGCGCCAGAATTGAAATGGAAAACAATG
GCACACAGAATGGATGTTAGGCAAGAAGTACAAAAAGGAACGAATGTTTCACATGGGTCA
AGAAGTCGTTTGAATGCTCGATTTAATGAGTGTTGCCAGTTGCTTGACCAGCTGGGAATT
CCTTGGATAAAATCAGAGGGTGAAGCAGAAGCAACATGTGCAGCACTGAATAGTGTTGGA
GTGGTTGATGGCTGTATGACAAATGACAGCGACACATTTTTGTATGGAGCAAAATCCGTT
TATCGAAATTTGTCAATGACAACAGATAGAAATGATATTGATGTTGAGTGTTACGAACTG
TGTGATATCGAATCTAAATTACAACTCAACAGGAAGTCTCTTATTGCCCTCGGACTTCTG
CTCGGTTGTGATTATTCACCACAAGGAGTTCCTGGAGTTGGCAAGAAACAAGCAATTATG
TTGTTATCCTCCTGGAAAAACATAGATCCTTTAGAAAAATTGAAAGCTTGGAAATCTGAA
AGTGTTTTAAGTCCTACTGTAACAAAGAAACCAACACATTGTTCTGCATGCAGCCATATA
GGTTCGAAACGTGATCATAAAAAAAACGGTTGTGACATTTGTGGTTCTGAATGTGGAAGT
GAAACAGCTTTACCAGTTGACTGTTCATGTGAATGGCATGTACTTGAAAATGAACAACGG
AAGCACAACTTGGAAAATGGAATAAAGAAAAAGGCTTTACTGGTGGAAAACTTTCCCGAC
CCGAAAATCATCCGAGAGTTCACTCGCAACAAACTTGGAAGTCAACCTTTAAACCACTTG
TCACCACGACAACCAACACTCTTTGGTGCGGTCCAGTATCTATGCGAAAAATTAGAATGG
CAAGTGAAATATGCAGTGGACAAAGTTCTACCTTTATTGACTTATTGGTTGATGCAAAAT
GAAGGAACAATCAATGAGATTTCTTTTCAACGCATCGTGCGTACTCGCATTAAAGACCGT
GTCCCGTCGTTCGAGGTGAAGTGGTTCCTGTCGGGAATTGATGACGTCACAGAGGCCGTC
ACGCTCGAGCCACAAGAGTTGGTGACGAAGAAGTTTCCAGAAGCTTCCAAAAATTTTTTC
GCTGAACAGCAAGCAAAGAAAAAGAAAACTAAATCGAAAGGTGCCAAACAACAGAAGATA
CCAGCTGCCAAAATGACAGACTTTTACAAAATAACAAAAACAACGGAATTAACGTCAAAA
CCTTTAATTACAAAAGGCAATGACCTGAAAAATACGTCAACAACGCCTACAGCTGCCAAC
ACGGCGGCAAAAAACTCAGAAATATCTCCCATTCAATCCGAATACGTTAAAAATGATCTT
AAACGAAGTTCCCGCCCAACTTCGTCGTGTACCGTGGTTAGCAAAAGCAATGACGACGAT
GACGTCATTTTTGTGAGCGAATCCAGCCCCGCAAAACAAGGCAAGCTATCAAGCATTGTT
TCACATAAAACAAGTTGTATATCGAAAAAATTGTTATTTTAGTGTCTGCACTCATTATAG
CCTTATAAAGTTAGTCATTACGCAGCTTGGTAATAATTGCGAAAACAGTAACTCCTCAAC
TTTTTTATGTTTTAGTTAATTTATGCACTCGTCGTGTGTGTTTGCGACATTTTACCGCTT
TTATTTTTCGTTTTTCACAATAAGTTTTATTTGTTTTTTTTTCGTGTGCCACTAACGGTC
TATTGTTTTAGACCTTGATGTGTTGCACTTAATCGAATCTGTGGCGTCTTTCAAAATTAC
AAGCGATGAAAGTGAA
| SMART |
XPG_DNA_repair_N (IPR006085) - T[13-108] 2.0E-16 |
| Pfam |
XPG_DNA_repair_N (IPR006085) - T[13-107] 1.6E-12 |
| PANTHER |
XPG/Rad2 (IPR006084) - T[13-566] 3.3E-160 |
| SUPERFAMILY |
PIN-like_dom_sf (IPR029060) - T[14-222] 5.89E-46 |
| PRINTS |
XPG/Rad2 (IPR006084) - T[36-50] 4.2E-19 - T[82-101] 4.2E-19 - T[133-150] 4.2E-19 - T[154-174] 4.2E-19 - T[212-227] 4.2E-19 |
| SMART |
XPG-I_dom (IPR006086) - T[134-207] 1.5E-17 |
| Pfam |
XPG-I_dom (IPR006086) - T[135-222] 2.8E-25 |
| SUPERFAMILY |
5-3_exonuclease_C_sf (IPR036279) - T[207-251] 3.59E-17 - T[332-403] 3.59E-17 |
| SMART |
HhH2 (IPR008918) - T[209-243] 0.0012 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FEN1_HUMAN | 27.969 % | 104 | 3.16E-24 |
| GEN_HUMAN | 40.702 % | 350 | 4.78E-110 |
| ERCC5_HUMAN | 38.356 % | 98.2 | 3.28E-21 |