- Clone 'ma305k11' >
- Clone 'ma331c20' >
- Clone 'ma147m15' >
- Transcript 'KH2012:KH.C2.780.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.780.v1.A.ND1-1
Possible name(s)
SRSF4; SRSF5; SRSF6
Gene model
Location
KhC2 [6,627,249 / 6,629,437]
Amino acid sequence
Length: 316
>KH.C2.780.v1.A.ND1-1
LNCCKTHCFFSFTHGLIGCVTDKPAMSYRSRVYIGRLSHRARENDVEHFFRGYGKINDLM
LKNGFGFVIFDDERDADDAIHDLNGKSLCGERVMLEIAKGTPRGPGGEFVSNYTAPPDSR
RESSSRRSSSSSYYQQQQPRSSTKGIPNHGYRLIVENLSSRVTWQDLKDYMRQCGEVVYA
DANRYRRNEGVVEFSSRKEMKYAIEKLNGTEINGRHIKLTPNIKSPSRSRSRSGSRGRKS
GRYSRSRSRSGSRDKSKRSSSRSRSRSPKKAGKRSASKDNHNGVDKRKHSPHSDGSYRSR
SRTGSPDGRKSASRSP
Nucleotide sequence
Length: 2,188
>KH2012:KH.C2.780.v1.A.ND1-1
GTGTAGTTGTAAACTTTATTTGTTAATAACTAATTAAATTGCTGCAAAACCCATTGTTTT
TTTAGTTTTACGCACGGTTTAATAGGTTGTGTGACTGATAAACCAGCCATGTCTTACCGA
TCGCGAGTTTATATTGGCAGATTGAGCCACAGAGCGCGGGAAAACGACGTTGAGCACTTT
TTCAGAGGTTACGGGAAAATTAACGATCTTATGCTAAAGAATGGCTTCGGGTTCGTTATT
TTCGACGATGAGCGAGACGCCGACGATGCAATTCATGACCTAAACGGCAAAAGCTTATGC
GGTGAACGTGTTATGTTGGAAATCGCTAAAGGTACACCTCGTGGGCCAGGAGGCGAGTTT
GTATCTAACTATACAGCTCCACCGGATAGTAGAAGAGAGAGTTCTTCACGAAGATCGTCA
TCTTCATCTTATTATCAACAACAACAACCGCGTAGTTCAACCAAAGGAATCCCAAACCAT
GGTTATCGCTTAATTGTGGAAAATTTATCATCACGAGTCACATGGCAAGATTTGAAAGAT
TACATGCGCCAGTGTGGGGAGGTTGTGTATGCTGATGCTAACAGGTATCGCAGAAATGAA
GGCGTGGTTGAGTTTTCTTCAAGGAAAGAGATGAAGTACGCAATTGAGAAGCTCAATGGA
ACGGAAATAAATGGCCGACATATCAAGCTCACTCCGAATATTAAAAGTCCCTCAAGATCT
CGCTCAAGAAGTGGAAGCAGAGGAAGAAAAAGTGGAAGATACAGTCGCTCTCGATCCAGA
TCAGGAAGCAGAGATAAATCTAAGAGGTCGTCTTCACGTAGCCGATCCAGATCGCCCAAA
AAGGCCGGAAAACGCTCAGCTTCGAAGGATAACCATAACGGAGTCGATAAAAGGAAGCAT
TCACCTCATTCTGATGGAAGCTACAGAAGCCGCAGCAGAACTGGATCTCCAGATGGAAGA
AAATCAGCTTCTAGATCGCCATAGTTTGAACACAGTTGGAAATCATGGACCACATTTTCC
CTGCCTAAGATGATGCACAAAACACAGAAAAATGTACTAAACTAAAACTAGGCATATACT
AGTCAACTAAATGCTTGTATATATATTTGTTATCTTGGTTGCACATACGTGACATATTCT
TTGGGCCCCCCTATTTTTATAAACAAAACATTAATAAGGAGTAAACCATTTTTCCCTTTT
TCAACTGGATAACATATGGTGGCTTATGCACAGAAATCTGTATAAAATCAAATGTAAACA
TTCTGATATTTTTTAGTGGCCAAGCCAAGGGACAATCTCAATCTTATTTTACATTTTGGC
AATTCAATTCAATTTTAGTTGGTTCAATTCAAATTTATTTGGCAAGCAATACAACATGGT
CTTATAGCTGGCAATGCAATTCAAATCAATTGTAGGGCACACAAGGTACAGCAGCCAAAA
CAACAAAACGTGACCCTTTACATTTTGGATCATAGTCAATAGCGTGGGGTTCAATTCAAT
CTCCCGAGCAACTGATTTAACTTTAATATCAATAATTTCATTTAAGCAGGTAGGAGTTAT
GTCTTCTTGATGTTAGGTATATTTTCTCACGAACGCAGCATGAAGAAGGGAAGTCTTATT
TCTGTTACATTCCTATATTGTAAAGTAAAATTTCCTAAAAAGATGAGACCTAATTGAAAA
ACTGTGTAAATAAAAGCTTTGACTAAGATATCTTGTTGATATGTATTTGAACTGTGGTGT
ATTACACTCTTGTTGTGATTATCGTAAATATTCAATGCTTGAGCTGAATTTTAGTTTCTT
TTCACTTACATATTAAAGAGCTTTGGTTGTGGGTGTTCTTGTTTTTACATTGGTTAATAA
TTTTCACCCACAAATTAATTCAGTTTCAAGAAACGTGCCTTGCTCTAACAATTGTCACAC
CCAGGCACCGAACCCTATAAAAATCAGGGGTGACAGCAGTTGTCAGTCACAAAATCGAAT
AAAAACAATTTTCATCTAATGCTATTTCCAACTGCCTAATGTGATGTAATTGTGGGGCAT
CATTCATTGCCTGCCACCCCAGGTTTGGTGCCTGTGCTGTCAACTATTGATGTCATTAAG
TTAAAATTGTACAATTCTGAATTAGTCTCACTTGTGTATTGCGTTGTTGATATATAATTG
TGTATAACCCAATCTTCATTTAGCGCAG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[21-106] 2.2E-18 - T[150-222] 1.0E-24 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[30-110] 1.09E-35 - T[148-221] 1.09E-35 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[30-100] 16.108 - T[151-224] 12.697 |
| CDD |
RRM1_SRSF4-like (IPR035585) - T[31-100] 1.08485E-37 |
| SMART |
RRM_dom (IPR000504) - T[31-96] 1.1E-14 - T[152-220] 7.7E-17 |
| Pfam |
RRM_dom (IPR000504) - T[32-93] 1.2E-13 - T[153-218] 9.4E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SRSF4_HUMAN | 57.513 % | 207 | 5.36E-63 |
| SRSF6_HUMAN | 51.531 % | 186 | 1.31E-56 |
| SRSF5_HUMAN | 54.737 % | 180 | 3.98E-55 |