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  1. Transcript 'KH2012:KH.C4.264.v1....'

Transcript Model

Transcript Id

KH2012:KH.C4.264.v1.A.SL2-1

Possible name(s)

CARF; TCF19

Location

KhC4 [3,799,843 / 3,803,767]

Sequences

Amino acid sequence

Length: 722

>KH.C4.264.v1.A.SL2-1
HTFVTYTYYATMDTVEYGSNTSLESEPCIKWFPSLELAEQELYRHEVDTMCSFTISKKKQ
TNADKRLVHWDKDNIPFFVMEFIKYKCTHGKGPGTRDRRNPALPPAKKHMRVKKTRKQDC
KAYITIRKIIKFPQFQVAPHQRSLGSKKKLISKFIKTNLDTNKDLVKCTLFRMTFPDAGD
HHGHEIGKVQLGTVTNLNRLVLKYLKEIIAKGNSSVPELKQLVDKYVVEELFKDRTPPPP
TNRIFYPTNRTIRNHLYTAGIKATPQPRCKRKSKQALLPLESSNTDNFDILIDATEVIQD
KSVQTNRMLELIDTIKKEMYNVTSIDALVQAEDLLHTALQVLKNSCVDPVVRDEMVVSDE
MVATSIQGKRKMFPVSNSEGPQSKFQKIYEDILVGTSQPQVFTSDSDQLTLHTNPGVNIV
VKTQDKIKSTLQKKGSLTKIVPSINLMGLNVNQPLLKIGQDTLSYVQLMTLEKSVNAVDR
NCLRSFDETFQDGKLCDNIINSYLWQLTSRYNHVIHADTSVGYRIQHGEDVGQLWENVKK
NEKSYAFIPWKSNGQYWVMIAINIKERKLLYLDPNQTDDIDKTQYIYEAKEFINRSLSDI
LGFSLTSSATNVHKPNKGNMSPGIYVCMYAYWLTKGMSLVQPHKPVLFRKHIFDTIVGNC
TLGFQNKDNCKVCHKNIRHITGNSTLWVECSSCQQWYHAQCVGMSEEQLICDADFSCPRD
LN

Nucleotide sequence

Length: 2,689

>KH2012:KH.C4.264.v1.A.SL2-1
ATTAAAAGATGAAATACTGCTTTGTTTTGGAACTTAACATACTTTTGTAACTTATACTTA
TTATGCCACAATGGATACTGTAGAATATGGATCAAATACATCATTGGAGTCCGAACCCTG
TATTAAGTGGTTTCCATCATTGGAACTGGCAGAACAAGAGTTATATAGGCATGAAGTTGA
TACAATGTGTTCCTTTACTATATCTAAAAAAAAGCAAACTAATGCAGACAAGCGGCTGGT
ACATTGGGACAAAGATAACATACCATTCTTTGTAATGGAATTTATTAAGTACAAATGTAC
ACATGGCAAGGGGCCGGGCACCAGAGATAGACGGAATCCTGCACTTCCCCCAGCGAAGAA
GCATATGCGTGTTAAAAAAACAAGAAAACAAGATTGTAAAGCTTACATTACAATTAGGAA
AATTATAAAATTTCCACAATTCCAGGTTGCACCACATCAGCGCAGTTTAGGGTCTAAAAA
AAAACTTATTTCCAAATTTATTAAGACAAATTTGGACACCAACAAAGATTTAGTTAAGTG
CACGCTATTTCGAATGACTTTTCCTGATGCTGGTGACCATCATGGCCATGAGATTGGAAA
GGTTCAGTTGGGAACTGTAACAAACCTGAACCGGTTAGTTTTGAAATATCTCAAGGAAAT
AATCGCTAAAGGAAACTCATCAGTGCCTGAGCTTAAGCAGCTTGTTGACAAGTATGTTGT
TGAAGAACTCTTCAAAGATAGAACTCCACCACCACCAACAAACAGAATATTTTATCCAAC
TAATCGTACTATTCGCAATCATTTGTACACAGCTGGTATTAAAGCAACACCACAACCAAG
GTGCAAACGAAAATCGAAACAAGCTTTGTTACCCCTTGAATCGTCTAATACAGACAATTT
TGATATACTTATTGATGCGACTGAAGTCATACAAGATAAATCAGTTCAAACTAATAGGAT
GCTGGAACTTATAGACACCATTAAAAAGGAGATGTACAATGTTACTTCAATAGATGCCTT
GGTACAAGCAGAGGATCTTTTACATACAGCTTTACAAGTTCTAAAAAACAGTTGCGTTGA
CCCAGTTGTAAGGGATGAGATGGTTGTAAGTGATGAAATGGTTGCAACCAGCATACAGGG
AAAGCGAAAGATGTTTCCAGTGTCAAATAGTGAAGGACCACAGTCTAAGTTTCAAAAAAT
ATATGAGGATATTTTGGTTGGTACATCTCAGCCACAAGTTTTTACATCAGACAGTGATCA
GTTGACACTTCATACAAATCCTGGGGTGAATATTGTGGTTAAAACACAAGATAAAATCAA
ATCAACACTACAAAAGAAAGGGAGTTTAACCAAAATAGTGCCTTCAATAAATTTGATGGG
TCTTAATGTAAATCAGCCACTTCTAAAGATTGGACAAGATACACTCTCTTATGTACAACT
TATGACTTTGGAAAAATCGGTAAATGCTGTAGATAGGAATTGCCTGCGTTCATTTGACGA
AACTTTTCAAGATGGAAAGTTATGTGACAATATCATTAACAGTTATTTGTGGCAGCTTAC
TTCAAGATATAATCATGTCATCCATGCTGATACCAGTGTTGGATACAGAATTCAACATGG
TGAAGATGTGGGACAATTATGGGAAAATGTTAAAAAAAATGAAAAGTCTTATGCATTTAT
TCCATGGAAATCAAATGGCCAGTATTGGGTTATGATAGCAATCAATATCAAGGAGCGCAA
GCTGTTGTACTTGGATCCAAACCAAACAGATGATATTGATAAAACACAGTATATTTATGA
GGCCAAAGAATTCATCAATCGTTCATTATCAGATATTTTAGGATTTTCTTTGACTTCAAG
TGCCACCAACGTGCATAAGCCCAACAAAGGGAATATGTCTCCTGGTATATACGTGTGCAT
GTACGCATACTGGCTAACAAAAGGAATGAGCTTAGTACAACCCCACAAACCTGTATTGTT
TCGGAAACATATTTTTGACACCATAGTTGGAAATTGTACATTGGGTTTTCAGAACAAAGA
CAATTGCAAAGTGTGTCATAAAAATATCAGGCATATAACTGGCAACAGTACATTGTGGGT
AGAGTGCTCATCTTGTCAACAGTGGTATCATGCACAATGTGTGGGAATGTCTGAAGAACA
ACTTATATGTGATGCTGATTTTTCATGTCCAAGAGATCTGAACTGATTATTGACATTATC
CCAAACCATAATTTGGTGTTCAGTTTAAACATATAAAATGTAATGGTTTAACATGTGGTC
ATATATTCACATATTTAAAATTTACTGTGACAAATATTATAAATTGAATTTGTTGTACCA
TAGTTTCTCCCATTATAAACAATAAATCTGTACTTAAAATAAAAAGTCTGTACTTAAAAT
AAATTTATTAGTTTCCAAACTGTAAGACAGCATAGAAATACAAAAAACAATCAACAATTA
ATCGCTCACAAAATTTCATGTATATATTTCTGGTAAAACGTAAGTGTGCACAAGGTGTAT
GAAAAAGGCCTTTAGTGTTATAACAACTGTCTTTTTTTCTTTATTGGTACAATAAATAGG
GGTGATTTATCTAATATCTATTTATTTATAGGTATTGGGTATACCTTCATTAAATCAAAA
TTTATAATATGCAGAAATGTTATGTCTTTTATTTATTTAAAATTTACAG

InterProScan

Pfam
CaRF (IPR029309) - T[63-258] 1.1E-32
Pfam
Peptidase_C48_C (IPR003653) - T[531-640] 5.9E-5
Gene3D
Znf_RING/FYVE/PHD (IPR013083) - T[663-720] 1.3E-8
SUPERFAMILY
Znf_FYVE_PHD (IPR011011) - T[665-718] 1.28E-7
SMART
Znf_PHD (IPR001965) - T[669-721] 2.7E-4

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value





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