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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C4.420.v1....'

Transcript Model

Transcript Id

KH2012:KH.C4.420.v1.A.ND2-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C4.420

Location

KhC4 [1,755,563 / 1,756,366]

Sequences

Amino acid sequence

Length: 92

>KH.C4.420.v1.A.ND2-1
RRSVFVIYNFVSRLIEMSKAHPPELKKFMDKKLDLKLNGGRSIQGILRGFDPFMNLVIDD
GIGKRKDGSVEKIGMVVVRGNSVLMMEAVDRI

Nucleotide sequence

Length: 803

>KH2012:KH.C4.420.v1.A.ND2-1
GCCAATCATTGTTTAAGAATTGTGCCGACCGCTCATCCATTTTAACGCATGGCGCGTCAA
GTGAAATGTCGGTCAAAAATCGATTTGTGATCTGACGTCGATCAGTGTTTGTGATCTACA
ACTTTGTATCCAGACTAATCGAAATGAGCAAGGCGCACCCTCCTGAGCTTAAAAAGTTTA
TGGACAAGAAGTTGGATTTAAAATTAAATGGCGGACGAAGCATTCAGGGAATTCTACGAG
GATTTGATCCGTTCATGAACTTAGTTATTGACGATGGTATAGGCAAAAGAAAGGACGGTT
CAGTTGAAAAGATCGGTATGGTTGTCGTGCGCGGAAACTCTGTATTAATGATGGAGGCTG
TGGACCGGATATAGTCGAATAATCAAAGGCTTATCCGTGGTAAACAATCATTAAGAGTTC
TGTTATTCAAACATAAGAATTCAATTAATATAGAAAGCGACATTATTATTCATCGTAGTG
TCAACATTTTGGAACTTCTTTGTTATGTTCAATATACATTTTCTAATTTGATTTCAATTC
ACTACTCCCAATTAAATCATACATGTTTTTGTTGAATGTGTCTCTGTTTTCTATGGTCAC
TTTATTATCATTGACAAATACAACTTTTATATTTGACCTACCTGTCTCGCTGTCTGAATG
TTGTGTTTTGCCGTTGTGTCTTACATGTTAAGCTGGAAGTAACAAATTTAACTCAAAATT
GAAGAATGGCCAAAAGTAACTACAGATCTTAGGTTTTTTTTTGAATGTCTTTTCGAGAAA
ATTAGTCACTTTAATTTAATTAG

InterProScan

CDD
Sm_G (IPR034098) - T[21-90] 2.72611E-37
SMART
LSM_dom_euk/arc (IPR001163) - T[23-88] 3.9E-20
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[23-90] 1.19E-17
Pfam
LSM_dom_euk/arc (IPR001163) - T[24-87] 4.3E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RUXG_HUMAN 71.053 % 117 1.73E-36
RUXGL_HUMAN 67.105 % 112 2.69E-34