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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C5.392.v2....' > 
  2. Clone 'cien85723' > 
  3. Transcript 'KH2012:KH.C1.374.v2....' > 
  4. Transcript 'KH2012:KH.C9.38.v11....' > 
  5. Transcript 'KH2012:KH.C4.420.v1....'

Transcript Model

Transcript Id

KH2012:KH.C4.420.v1.A.nonSL1-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C4.420

Location

KhC4 [1,755,563 / 1,756,233]

Sequences

Amino acid sequence

Length: 79

>KH.C4.420.v1.A.nonSL1-1
LIEMSKAHPPELKKFMDKKLDLKLNGGRSIQGILRGFDPFMNLVIDDGIGKRKDGSVEKI
GMVVVRGNSVLMMEAVDRI

Nucleotide sequence

Length: 670

>KH2012:KH.C4.420.v1.A.nonSL1-1
ACTAATCGAAATGAGCAAGGCGCACCCTCCTGAGCTTAAAAAGTTTATGGACAAGAAGTT
GGATTTAAAATTAAATGGCGGACGAAGCATTCAGGGAATTCTACGAGGATTTGATCCGTT
CATGAACTTAGTTATTGACGATGGTATAGGCAAAAGAAAGGACGGTTCAGTTGAAAAGAT
CGGTATGGTTGTCGTGCGCGGAAACTCTGTATTAATGATGGAGGCTGTGGACCGGATATA
GTCGAATAATCAAAGGCTTATCCGTGGTAAACAATCATTAAGAGTTCTGTTATTCAAACA
TAAGAATTCAATTAATATAGAAAGCGACATTATTATTCATCGTAGTGTCAACATTTTGGA
ACTTCTTTGTTATGTTCAATATACATTTTCTAATTTGATTTCAATTCACTACTCCCAATT
AAATCATACATGTTTTTGTTGAATGTGTCTCTGTTTTCTATGGTCACTTTATTATCATTG
ACAAATACAACTTTTATATTTGACCTACCTGTCTCGCTGTCTGAATGTTGTGTTTTGCCG
TTGTGTCTTACATGTTAAGCTGGAAGTAACAAATTTAACTCAAAATTGAAGAATGGCCAA
AAGTAACTACAGATCTTAGGTTTTTTTTTGAATGTCTTTTCGAGAAAATTAGTCACTTTA
ATTTAATTAG

InterProScan

CDD
Sm_G (IPR034098) - T[8-77] 3.6652E-37
SMART
LSM_dom_euk/arc (IPR001163) - T[10-75] 3.9E-20
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[10-77] 6.95E-18
Pfam
LSM_dom_euk/arc (IPR001163) - T[11-74] 2.6E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RUXG_HUMAN 71.053 % 117 1.18E-36
RUXGL_HUMAN 67.105 % 112 1.7E-34