Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C4.420.v1.A.nonSL1-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C4.420

Location

KhC4 [1,755,563 / 1,756,233]

Sequences

Amino acid sequence

Length: 79

>KH.C4.420.v1.A.nonSL1-1
LIEMSKAHPPELKKFMDKKLDLKLNGGRSIQGILRGFDPFMNLVIDDGIGKRKDGSVEKI
GMVVVRGNSVLMMEAVDRI

Nucleotide sequence

Length: 670

>KH2012:KH.C4.420.v1.A.nonSL1-1
ACTAATCGAAATGAGCAAGGCGCACCCTCCTGAGCTTAAAAAGTTTATGGACAAGAAGTT
GGATTTAAAATTAAATGGCGGACGAAGCATTCAGGGAATTCTACGAGGATTTGATCCGTT
CATGAACTTAGTTATTGACGATGGTATAGGCAAAAGAAAGGACGGTTCAGTTGAAAAGAT
CGGTATGGTTGTCGTGCGCGGAAACTCTGTATTAATGATGGAGGCTGTGGACCGGATATA
GTCGAATAATCAAAGGCTTATCCGTGGTAAACAATCATTAAGAGTTCTGTTATTCAAACA
TAAGAATTCAATTAATATAGAAAGCGACATTATTATTCATCGTAGTGTCAACATTTTGGA
ACTTCTTTGTTATGTTCAATATACATTTTCTAATTTGATTTCAATTCACTACTCCCAATT
AAATCATACATGTTTTTGTTGAATGTGTCTCTGTTTTCTATGGTCACTTTATTATCATTG
ACAAATACAACTTTTATATTTGACCTACCTGTCTCGCTGTCTGAATGTTGTGTTTTGCCG
TTGTGTCTTACATGTTAAGCTGGAAGTAACAAATTTAACTCAAAATTGAAGAATGGCCAA
AAGTAACTACAGATCTTAGGTTTTTTTTTGAATGTCTTTTCGAGAAAATTAGTCACTTTA
ATTTAATTAG

InterProScan

CDD	Sm_G (IPR034098) - T[8-77] 3.6652E-37
SMART	LSM_dom_euk/arc (IPR001163) - T[10-75] 3.9E-20
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[10-77] 6.95E-18
Pfam	LSM_dom_euk/arc (IPR001163) - T[11-74] 2.6E-19

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RUXG_HUMAN	71.053 %	117	1.18E-36
RUXGL_HUMAN	67.105 %	112	1.7E-34