Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C4.420.v1.A.nonSL13-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C4.420

Location

KhC4 [1,755,563 / 1,756,267]

Sequences

Amino acid sequence

Length: 90

>KH.C4.420.v1.A.nonSL13-1
SVFVIYNFVSRLIEMSKAHPPELKKFMDKKLDLKLNGGRSIQGILRGFDPFMNLVIDDGI
GKRKDGSVEKIGMVVVRGNSVLMMEAVDRI

Nucleotide sequence

Length: 704

>KH2012:KH.C4.420.v1.A.nonSL13-1
GATCAGTGTTTGTGATCTACAACTTTGTATCCAGACTAATCGAAATGAGCAAGGCGCACC
CTCCTGAGCTTAAAAAGTTTATGGACAAGAAGTTGGATTTAAAATTAAATGGCGGACGAA
GCATTCAGGGAATTCTACGAGGATTTGATCCGTTCATGAACTTAGTTATTGACGATGGTA
TAGGCAAAAGAAAGGACGGTTCAGTTGAAAAGATCGGTATGGTTGTCGTGCGCGGAAACT
CTGTATTAATGATGGAGGCTGTGGACCGGATATAGTCGAATAATCAAAGGCTTATCCGTG
GTAAACAATCATTAAGAGTTCTGTTATTCAAACATAAGAATTCAATTAATATAGAAAGCG
ACATTATTATTCATCGTAGTGTCAACATTTTGGAACTTCTTTGTTATGTTCAATATACAT
TTTCTAATTTGATTTCAATTCACTACTCCCAATTAAATCATACATGTTTTTGTTGAATGT
GTCTCTGTTTTCTATGGTCACTTTATTATCATTGACAAATACAACTTTTATATTTGACCT
ACCTGTCTCGCTGTCTGAATGTTGTGTTTTGCCGTTGTGTCTTACATGTTAAGCTGGAAG
TAACAAATTTAACTCAAAATTGAAGAATGGCCAAAAGTAACTACAGATCTTAGGTTTTTT
TTTGAATGTCTTTTCGAGAAAATTAGTCACTTTAATTTAATTAG

InterProScan

CDD	Sm_G (IPR034098) - T[19-88] 2.54368E-37
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[21-88] 1.1E-17
SMART	LSM_dom_euk/arc (IPR001163) - T[21-86] 3.9E-20
Pfam	LSM_dom_euk/arc (IPR001163) - T[22-85] 4.0E-19

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RUXG_HUMAN	71.053 %	117	1.39E-36
RUXGL_HUMAN	67.105 %	112	2.18E-34