Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C4.420.v1.A.nonSL23-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C4.420

Location

KhC4 [1,755,563 / 1,756,280]

Sequences

Amino acid sequence

Length: 92

>KH.C4.420.v1.A.nonSL23-1
RRSVFVIYNFVSRLIEMSKAHPPELKKFMDKKLDLKLNGGRSIQGILRGFDPFMNLVIDD
GIGKRKDGSVEKIGMVVVRGNSVLMMEAVDRI

Nucleotide sequence

Length: 717

>KH2012:KH.C4.420.v1.A.nonSL23-1
GTGATCTGACGTCGATCAGTGTTTGTGATCTACAACTTTGTATCCAGACTAATCGAAATG
AGCAAGGCGCACCCTCCTGAGCTTAAAAAGTTTATGGACAAGAAGTTGGATTTAAAATTA
AATGGCGGACGAAGCATTCAGGGAATTCTACGAGGATTTGATCCGTTCATGAACTTAGTT
ATTGACGATGGTATAGGCAAAAGAAAGGACGGTTCAGTTGAAAAGATCGGTATGGTTGTC
GTGCGCGGAAACTCTGTATTAATGATGGAGGCTGTGGACCGGATATAGTCGAATAATCAA
AGGCTTATCCGTGGTAAACAATCATTAAGAGTTCTGTTATTCAAACATAAGAATTCAATT
AATATAGAAAGCGACATTATTATTCATCGTAGTGTCAACATTTTGGAACTTCTTTGTTAT
GTTCAATATACATTTTCTAATTTGATTTCAATTCACTACTCCCAATTAAATCATACATGT
TTTTGTTGAATGTGTCTCTGTTTTCTATGGTCACTTTATTATCATTGACAAATACAACTT
TTATATTTGACCTACCTGTCTCGCTGTCTGAATGTTGTGTTTTGCCGTTGTGTCTTACAT
GTTAAGCTGGAAGTAACAAATTTAACTCAAAATTGAAGAATGGCCAAAAGTAACTACAGA
TCTTAGGTTTTTTTTTGAATGTCTTTTCGAGAAAATTAGTCACTTTAATTTAATTAG

InterProScan

CDD	Sm_G (IPR034098) - T[21-90] 2.72611E-37
SMART	LSM_dom_euk/arc (IPR001163) - T[23-88] 3.9E-20
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[23-90] 1.19E-17
Pfam	LSM_dom_euk/arc (IPR001163) - T[24-87] 4.3E-19

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RUXG_HUMAN	71.053 %	117	1.73E-36
RUXGL_HUMAN	67.105 %	112	2.69E-34