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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C4.420.v1....'

Transcript Model

Transcript Id

KH2012:KH.C4.420.v1.A.nonSL30-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C4.420

Location

KhC4 [1,755,563 / 1,756,226]

Sequences

Amino acid sequence

Length: 77

>KH.C4.420.v1.A.nonSL30-1
EMSKAHPPELKKFMDKKLDLKLNGGRSIQGILRGFDPFMNLVIDDGIGKRKDGSVEKIGM
VVVRGNSVLMMEAVDRI

Nucleotide sequence

Length: 663

>KH2012:KH.C4.420.v1.A.nonSL30-1
GAAATGAGCAAGGCGCACCCTCCTGAGCTTAAAAAGTTTATGGACAAGAAGTTGGATTTA
AAATTAAATGGCGGACGAAGCATTCAGGGAATTCTACGAGGATTTGATCCGTTCATGAAC
TTAGTTATTGACGATGGTATAGGCAAAAGAAAGGACGGTTCAGTTGAAAAGATCGGTATG
GTTGTCGTGCGCGGAAACTCTGTATTAATGATGGAGGCTGTGGACCGGATATAGTCGAAT
AATCAAAGGCTTATCCGTGGTAAACAATCATTAAGAGTTCTGTTATTCAAACATAAGAAT
TCAATTAATATAGAAAGCGACATTATTATTCATCGTAGTGTCAACATTTTGGAACTTCTT
TGTTATGTTCAATATACATTTTCTAATTTGATTTCAATTCACTACTCCCAATTAAATCAT
ACATGTTTTTGTTGAATGTGTCTCTGTTTTCTATGGTCACTTTATTATCATTGACAAATA
CAACTTTTATATTTGACCTACCTGTCTCGCTGTCTGAATGTTGTGTTTTGCCGTTGTGTC
TTACATGTTAAGCTGGAAGTAACAAATTTAACTCAAAATTGAAGAATGGCCAAAAGTAAC
TACAGATCTTAGGTTTTTTTTTGAATGTCTTTTCGAGAAAATTAGTCACTTTAATTTAAT
TAG

InterProScan

CDD
Sm_G (IPR034098) - T[6-75] 2.59374E-37
SMART
LSM_dom_euk/arc (IPR001163) - T[8-73] 3.9E-20
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[8-75] 6.34E-18
Pfam
LSM_dom_euk/arc (IPR001163) - T[9-72] 2.4E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RUXG_HUMAN 71.053 % 117 1.01E-36
RUXGL_HUMAN 67.105 % 112 1.57E-34