Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C4.420.v1.A.nonSL32-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C4.420

Location

KhC4 [1,755,563 / 1,756,247]

Sequences

Amino acid sequence

Length: 84

>KH.C4.420.v1.A.nonSL32-1
NFVSRLIEMSKAHPPELKKFMDKKLDLKLNGGRSIQGILRGFDPFMNLVIDDGIGKRKDG
SVEKIGMVVVRGNSVLMMEAVDRI

Nucleotide sequence

Length: 684

>KH2012:KH.C4.420.v1.A.nonSL32-1
AACTTTGTATCCAGACTAATCGAAATGAGCAAGGCGCACCCTCCTGAGCTTAAAAAGTTT
ATGGACAAGAAGTTGGATTTAAAATTAAATGGCGGACGAAGCATTCAGGGAATTCTACGA
GGATTTGATCCGTTCATGAACTTAGTTATTGACGATGGTATAGGCAAAAGAAAGGACGGT
TCAGTTGAAAAGATCGGTATGGTTGTCGTGCGCGGAAACTCTGTATTAATGATGGAGGCT
GTGGACCGGATATAGTCGAATAATCAAAGGCTTATCCGTGGTAAACAATCATTAAGAGTT
CTGTTATTCAAACATAAGAATTCAATTAATATAGAAAGCGACATTATTATTCATCGTAGT
GTCAACATTTTGGAACTTCTTTGTTATGTTCAATATACATTTTCTAATTTGATTTCAATT
CACTACTCCCAATTAAATCATACATGTTTTTGTTGAATGTGTCTCTGTTTTCTATGGTCA
CTTTATTATCATTGACAAATACAACTTTTATATTTGACCTACCTGTCTCGCTGTCTGAAT
GTTGTGTTTTGCCGTTGTGTCTTACATGTTAAGCTGGAAGTAACAAATTTAACTCAAAAT
TGAAGAATGGCCAAAAGTAACTACAGATCTTAGGTTTTTTTTTGAATGTCTTTTCGAGAA
AATTAGTCACTTTAATTTAATTAG

InterProScan

CDD	Sm_G (IPR034098) - T[13-82] 3.34288E-37
SMART	LSM_dom_euk/arc (IPR001163) - T[15-80] 3.9E-20
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[15-82] 8.8E-18
Pfam	LSM_dom_euk/arc (IPR001163) - T[16-79] 3.2E-19

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RUXG_HUMAN	71.053 %	117	1.67E-36
RUXGL_HUMAN	67.105 %	112	2.33E-34