Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C4.420.v1.A.nonSL6-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C4.420

Location

KhC4 [1,755,563 / 1,756,236]

Sequences

Amino acid sequence

Length: 80

>KH.C4.420.v1.A.nonSL6-1
RLIEMSKAHPPELKKFMDKKLDLKLNGGRSIQGILRGFDPFMNLVIDDGIGKRKDGSVEK
IGMVVVRGNSVLMMEAVDRI

Nucleotide sequence

Length: 673

>KH2012:KH.C4.420.v1.A.nonSL6-1
CAGACTAATCGAAATGAGCAAGGCGCACCCTCCTGAGCTTAAAAAGTTTATGGACAAGAA
GTTGGATTTAAAATTAAATGGCGGACGAAGCATTCAGGGAATTCTACGAGGATTTGATCC
GTTCATGAACTTAGTTATTGACGATGGTATAGGCAAAAGAAAGGACGGTTCAGTTGAAAA
GATCGGTATGGTTGTCGTGCGCGGAAACTCTGTATTAATGATGGAGGCTGTGGACCGGAT
ATAGTCGAATAATCAAAGGCTTATCCGTGGTAAACAATCATTAAGAGTTCTGTTATTCAA
ACATAAGAATTCAATTAATATAGAAAGCGACATTATTATTCATCGTAGTGTCAACATTTT
GGAACTTCTTTGTTATGTTCAATATACATTTTCTAATTTGATTTCAATTCACTACTCCCA
ATTAAATCATACATGTTTTTGTTGAATGTGTCTCTGTTTTCTATGGTCACTTTATTATCA
TTGACAAATACAACTTTTATATTTGACCTACCTGTCTCGCTGTCTGAATGTTGTGTTTTG
CCGTTGTGTCTTACATGTTAAGCTGGAAGTAACAAATTTAACTCAAAATTGAAGAATGGC
CAAAAGTAACTACAGATCTTAGGTTTTTTTTTGAATGTCTTTTCGAGAAAATTAGTCACT
TTAATTTAATTAG

InterProScan

CDD	Sm_G (IPR034098) - T[9-78] 3.69498E-37
SMART	LSM_dom_euk/arc (IPR001163) - T[11-76] 3.9E-20
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[11-78] 7.36E-18
Pfam	LSM_dom_euk/arc (IPR001163) - T[12-75] 2.7E-19

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RUXG_HUMAN	71.053 %	117	1.23E-36
RUXGL_HUMAN	67.105 %	112	1.7E-34