- Transcript 'KH2012:KH.C3.199.v2....' >
- Transcript 'KH2012:KH.C4.737.v1....'
Transcript Model
Transcript Id
KH2012:KH.C4.737.v1.A.SL3-1
Possible name(s)
SMU1; WDHD1; WDR5
Gene model
Location
KhC4 [3,328,518 / 3,343,943]
Amino acid sequence
Length: 1,108
>KH.C4.737.v1.A.SL3-1
LVNMSNSKPSFRYGHSEGRTEVCYDHSGKHLVSCGFDGNVKIWKSIKDDNPTNINAGERV
YSIGIKGKTLFSASDENSVDKFSLPDGSPDGCLVRFTGTVTHLSVSETRKLVAAGSSDFD
IKTIDVETGKQKSYLGHQAPILSVAVDPMDEYLASSSCDGNLKIWTLKDAKCVKTLQIIS
RSNDVGNSQTLSKISWRPVTGEDIAVPTETGVKIFNRVTWVLLQTLTSDVTSTAYQCCSF
SQCGRFLAAASADGWIVVWDTETQLTVRKIQHPLKSCISSIAWNPQQNNCVAFSDTRGQI
GVLEDVVESEEPTKPRRDEDDLDALFDEEDDNMMVDMMADEDDKPQTKSDVPELPKRNKP
NIFDDDDDQDDVNNKNATQESDLPPIPCTLDVFTTDTDVDLAPPTILPSLPIETKYTLED
DASSVATATVTAPTNFQPSSMQPPFQPTSTPTHLSHRFMVWNAVGVIRSYTDVTESAIDV
EFHDTQTHHALHLPNHDQYTMADLSVQAVVLAAESSVDAASKLKCVHFSSWDNNKEWVIE
MPDGEEIQAVTTGDGWIAVCTDALQVRFFSLGGIQRQILSIPGNVVAMAANMDQLLVVYH
ITQGNSGSKPRSIVGGSPLPISQGSKLEWVGFTAEGTPATVDTLGVVRMINRSFCQTWTT
VVKLKSITKSRHDHCWVVGLHENPQQIRYIQCKGSIYPSTLPRPTMAVAHYKIPLCEPES
DKAKYEEEYWRTKIFSSHREYLTSRGYETDGGEKQKSDLVVQQTLMRLFALCCKSDAEYQ
AFDVCSMMPSSASMSLAIKYSSRIRKIMLAQRLSEVCQEKVQEEQEAILKQQRKVMQMVE
SDDEEEEEDFRTELQSGYSAAETEWSSQKSSRKPTSSRPVDVDNDDDDVTKSVSSVTSST
KPTTSAASPSGSVLDGIKRATPIHQSKKQTEGAKGSKSKEKKSGQSTLFSTKLNLTSTPK
PKKTSQRSKMDVNEEEEVQILQEKPAATDNEVPRVISGVQLFLEEHLQSIEEQHPDLDGI
EVRKIGIKQFRALPAEEKQTWNSRAKSSKVTASKRKHEVDENDPPNCDDVILSTNPAKNL
RLDLDESTDAESGDARAKLSAFAYSSAE
Nucleotide sequence
Length: 3,612
>KH2012:KH.C4.737.v1.A.SL3-1
TTTAGGTTTCTTACATGTAATTACTGCAGAACATAACTAGTAAATATGAGCAATAGTAAA
CCATCTTTTCGATACGGTCACTCCGAAGGTCGAACTGAAGTTTGCTACGACCATTCTGGA
AAACATCTTGTTTCTTGTGGTTTTGATGGAAATGTGAAAATTTGGAAATCTATTAAAGAT
GATAATCCAACTAATATAAATGCAGGGGAACGTGTCTATAGTATTGGAATTAAGGGCAAA
ACTTTGTTCTCTGCATCTGATGAAAATTCTGTCGATAAATTTTCATTACCCGATGGTTCA
CCTGATGGTTGTCTTGTTCGTTTCACTGGAACTGTCACCCATCTTTCTGTGTCAGAAACA
AGAAAACTGGTGGCAGCTGGATCAAGTGATTTTGACATCAAGACAATTGACGTGGAAACT
GGGAAACAAAAGTCGTATCTCGGACATCAAGCTCCGATATTAAGTGTGGCAGTTGATCCT
ATGGATGAATACTTGGCCTCATCAAGCTGCGATGGAAACTTGAAGATTTGGACTCTAAAA
GACGCGAAATGTGTCAAAACTTTGCAAATAATTAGTCGTTCAAATGATGTTGGAAACTCG
CAAACTTTGTCCAAAATTTCATGGAGACCAGTAACTGGTGAAGACATTGCGGTCCCAACT
GAAACTGGAGTCAAAATATTCAACAGAGTAACATGGGTGTTGCTGCAAACGTTGACCAGT
GATGTCACGTCAACGGCTTACCAATGCTGCAGCTTCTCCCAATGTGGTCGATTCTTAGCA
GCCGCATCAGCTGATGGGTGGATAGTTGTGTGGGATACTGAAACACAACTAACTGTTCGA
AAAATACAACATCCACTTAAATCCTGCATCTCATCCATCGCGTGGAATCCTCAGCAAAAT
AATTGCGTCGCATTTTCCGACACCAGAGGTCAGATTGGAGTTCTTGAAGACGTCGTAGAA
AGTGAAGAACCAACGAAACCAAGAAGAGACGAGGATGATTTGGATGCTTTGTTTGATGAG
GAAGATGACAACATGATGGTGGACATGATGGCAGATGAAGATGATAAACCACAAACGAAA
AGTGATGTTCCAGAACTTCCGAAACGAAACAAACCGAATATATTTGATGACGATGACGAC
CAAGATGATGTTAATAACAAGAATGCTACACAGGAGTCAGATTTACCTCCCATCCCATGC
ACACTTGATGTGTTCACCACGGACACGGATGTTGATCTTGCTCCTCCCACCATCCTCCCA
TCTCTTCCCATAGAAACAAAATACACACTTGAAGACGACGCATCATCGGTTGCCACGGCA
ACTGTCACGGCACCCACCAACTTTCAACCTAGTTCCATGCAACCTCCATTCCAACCAACC
TCAACACCAACACATCTATCTCACAGATTCATGGTATGGAACGCTGTTGGTGTGATTCGA
TCATACACTGATGTTACTGAGAGCGCAATTGATGTTGAATTCCATGATACGCAAACACAT
CATGCTCTGCATCTTCCTAACCATGATCAATACACCATGGCTGATCTATCAGTACAAGCT
GTTGTGTTGGCTGCTGAGTCTTCTGTTGATGCAGCAAGCAAATTGAAGTGTGTTCACTTT
TCATCTTGGGACAACAACAAGGAATGGGTGATTGAAATGCCGGATGGTGAAGAAATACAA
GCTGTTACCACTGGTGATGGGTGGATAGCTGTGTGCACTGACGCATTACAAGTCCGTTTC
TTCTCACTAGGTGGCATACAGAGGCAGATTCTGAGCATTCCCGGCAATGTGGTTGCCATG
GCAGCTAACATGGACCAGTTGCTTGTGGTCTACCATATTACCCAAGGTAATAGTGGGTCC
AAACCCCGTAGCATCGTTGGGGGTTCACCCTTACCCATATCCCAGGGGTCCAAACTTGAG
TGGGTGGGGTTTACTGCCGAAGGTACCCCAGCTACTGTTGATACCCTCGGTGTAGTTCGA
ATGATAAATAGAAGTTTCTGTCAGACGTGGACAACGGTGGTGAAACTAAAAAGCATTACC
AAATCTCGCCACGATCACTGCTGGGTTGTCGGTCTGCATGAAAACCCACAACAGATCCGA
TATATTCAATGCAAAGGATCAATTTACCCTTCAACACTACCGAGACCTACCATGGCAGTT
GCTCATTACAAAATACCACTGTGTGAGCCAGAGAGTGACAAGGCAAAATATGAAGAAGAA
TATTGGAGGACAAAGATCTTCTCATCCCACAGAGAGTACCTCACATCACGAGGATATGAA
ACGGATGGTGGCGAGAAACAAAAGAGTGATCTAGTCGTACAACAAACTCTCATGCGGCTA
TTTGCTCTTTGCTGCAAAAGTGACGCAGAGTACCAAGCATTTGATGTTTGCTCCATGATG
CCAAGCTCTGCCTCCATGTCCCTTGCCATCAAATATTCCTCCAGGATCAGAAAGATCATG
CTCGCACAGAGATTGAGCGAGGTTTGCCAAGAAAAAGTCCAGGAAGAGCAAGAAGCAATA
TTAAAACAACAACGCAAAGTTATGCAGATGGTGGAGAGCGATGATGAGGAAGAGGAAGAA
GACTTTAGAACTGAGTTACAATCAGGCTACAGTGCAGCAGAGACAGAATGGTCGTCTCAG
AAATCTTCTCGTAAACCAACGTCATCTCGACCAGTTGACGTGGACAATGACGACGATGAT
GTCACAAAGTCCGTCTCTTCCGTGACGTCATCCACAAAACCAACCACCTCTGCAGCATCA
CCTAGCGGCAGTGTGTTGGACGGAATAAAACGTGCCACACCAATTCACCAAAGTAAGAAG
CAAACAGAAGGTGCTAAGGGATCAAAAAGCAAAGAGAAAAAAAGCGGCCAATCAACTTTA
TTCTCAACCAAACTAAACCTCACTTCAACTCCTAAACCAAAGAAGACTTCCCAGAGGAGT
AAAATGGATGTAAATGAGGAGGAAGAGGTTCAGATCCTCCAGGAGAAACCAGCAGCTACC
GATAATGAAGTCCCGAGAGTCATTTCTGGCGTCCAACTTTTCCTGGAAGAACATCTTCAA
TCGATAGAGGAGCAACATCCGGACTTGGACGGGATTGAAGTTCGTAAAATTGGAATTAAA
CAATTCCGTGCCCTTCCTGCTGAAGAAAAACAGACTTGGAATTCTCGAGCAAAATCAAGC
AAGGTCACAGCTAGCAAACGTAAGCACGAGGTGGACGAAAACGACCCACCAAATTGTGAT
GACGTCATTTTATCCACAAATCCAGCCAAAAACCTTCGACTTGATCTGGACGAATCTACC
GACGCGGAAAGCGGCGACGCTCGCGCCAAACTCTCAGCTTTCGCATATTCATCCGCAGAG
TGATAAAAAAATGTTTCAAAAAATAATTTTATTCATCTTTTTCTATCGGTTTTTGACAAA
GTGAAATTAACACGGCAATATTTGCTGCGATAACAATACACCATTCTTCTATTAATCAAT
TATTCCTGTGTCGGTTTCTGGTTTAGTTCCTGTAGGTTTATACCAAGTATAGTAATACAA
CCGTGTGAATATTTCCCAATTACTTCTCCAGTTCTCCTTTGCGTATTGGAAGAAAATAAA
TCTTTTATTCTA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[2-131] 1.7E-15 - T[132-305] 9.9E-26 |
| SMART |
WD40_repeat (IPR001680) - T[6-44] 5.5E-4 - T[86-125] 1.1 - T[127-166] 9.1E-7 - T[219-260] 0.011 - T[263-304] 160.0 |
| SUPERFAMILY |
Quinoprotein_ADH-like_supfam (IPR011047) - T[8-296] 1.18E-45 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[12-44] 10.275 - T[134-175] 14.318 - T[239-269] 8.771 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[12-269] 16.586 |
| Pfam |
WD40_repeat (IPR001680) - T[14-44] 0.0042 - T[131-165] 9.5E-5 |
| Pfam |
Apc4_WD40_dom (IPR024977) - T[204-284] 2.5E-4 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[247-261] . |
| Pfam |
Mcl1_mid (IPR022100) - T[444-715] 1.3E-80 |
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[985-1050] 6.81E-8 |
| SMART |
HMG_box_dom (IPR009071) - T[991-1061] 0.0016 |
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[996-1047] 8.9E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDHD1_HUMAN | 35.582 % | 716 | 0 |