- Transcript 'KH2012:KH.C6.29.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C6.29.v1.A.SL1-1
Possible name(s)
NONO; PSPC1; SFPQ
Gene model
Location
KhC6 [1,533,633 / 1,551,600]
Amino acid sequence
Length: 848
>KH.C6.29.v1.A.SL1-1
FNNQSRGFKFFCVNSAKIMPANRYGGGGGSGNGRYFNNNNRQDRNYQQNRRHPPNHQTPM
PPPPVPPMMKNSPLPPKMPVPVPAVDMKKEKSPAKMKVPEPVPPPSLANETGHSSRNESN
DSHQNASNRPTERKFTQRSRLFIGNLPTSITEEEFKNLFRPFGEVSETFVNAEKGFGFVR
MDTRTNAERAKWELDGKVMRSNRQLRVRFATHGAALSVKNISPFVSNELLEEAFSQFGPV
ERAVVVVDDRGKSMERGIVEFARKSSATKALQQIRDGCFLLTSSPRAVVASTLEQEDTED
GLMERNVSKSQSYFQEREAPPRFAKPNSFEEEFARRWKALYDLERQQREHLEKNIQEAKE
KLETEMENAIHDHQTMLMKQDLLRRQEELQRLEEARKRELDRRQELEVARENARKKEMEG
QSQRLDMLRAQIEGTYKQDMPPHPSMGFNHQPGFGRPGSPLMPPQLHDQLAKELMGGQGG
LAPAPLIKVKSYHHIHSDMNKLMDSLDKMSDSDQNFYRLAYEHCNNICTCKAQNYKIEDP
MFERLEPCPKSFDCQSYSHWKHSIAMSWLNRFIDGFEWKFNKLKLQLLPIGPFPDFVENF
RSKDGLNLFQMLVQFLSSFFSGSIVEMLPQLNIEDLNVRKRQHSFTGKEQYLVTDFLPFL
KSHVPRDSFCVVALTWHDLYPSEDLNFVLGQASFYHYSCVASFGRFDPTYVRGFKGRNEG
IDVKDMEDISVVDAALLWKLIKVVTHETCHVFGLAHCGTFSCLMNNSCSSEEALSQPLTL
CPICMRKIQRACSKWGQDKFPFQVKTHLASLAQYLRTVMLPLMGSNDEMTNTRVHNTLQW
IDRVLNFI
Nucleotide sequence
Length: 2,850
>KH2012:KH.C6.29.v1.A.SL1-1
GTTTAATAATCAAAGTAGAGGTTTTAAATTTTTTTGTGTAAACTCGGCGAAAATAATGCC
TGCGAATCGTTACGGCGGCGGGGGAGGCAGTGGAAACGGTCGTTATTTTAACAACAACAA
TAGACAAGACCGAAATTATCAACAAAACAGACGCCACCCACCAAACCATCAAACACCCAT
GCCCCCACCCCCAGTGCCCCCTATGATGAAAAATAGCCCTCTTCCACCAAAAATGCCTGT
TCCTGTACCAGCAGTGGATATGAAAAAAGAAAAAAGTCCTGCGAAAATGAAAGTTCCAGA
GCCAGTACCACCCCCAAGCTTAGCCAATGAAACGGGGCATTCAAGTCGGAATGAGTCGAA
TGATTCACACCAAAACGCATCGAACCGACCAACAGAACGTAAATTCACTCAACGCAGTCG
TTTATTCATTGGCAATCTGCCAACCAGTATAACCGAAGAAGAATTTAAAAACTTGTTTCG
TCCTTTTGGGGAAGTATCCGAAACTTTTGTCAATGCTGAAAAAGGATTCGGTTTTGTAAG
AATGGATACAAGGACAAATGCTGAGAGAGCTAAATGGGAACTGGATGGCAAAGTTATGCG
ATCGAACAGACAGCTGCGTGTACGATTTGCCACACACGGTGCTGCACTTAGTGTTAAGAA
CATATCACCCTTTGTTTCAAACGAACTTCTCGAGGAAGCTTTCTCGCAGTTTGGTCCGGT
TGAACGAGCAGTGGTTGTCGTTGACGACCGTGGAAAATCAATGGAGCGTGGCATTGTTGA
ATTTGCGAGGAAATCTTCGGCAACAAAAGCTCTTCAACAAATCAGGGATGGCTGTTTCTT
ACTCACATCTTCACCAAGAGCAGTTGTAGCTTCAACATTGGAGCAGGAAGATACAGAAGA
TGGTCTTATGGAGAGGAATGTTTCAAAATCTCAATCATACTTCCAAGAGCGAGAGGCTCC
TCCGAGGTTTGCGAAACCAAACTCCTTTGAGGAGGAATTCGCTCGCAGATGGAAAGCTCT
TTATGATCTCGAGCGTCAGCAACGAGAACATCTCGAAAAAAACATCCAGGAGGCAAAAGA
GAAACTTGAAACAGAGATGGAAAATGCGATTCATGATCATCAAACTATGCTCATGAAACA
AGATCTTCTCAGAAGACAAGAAGAGCTTCAAAGATTGGAGGAAGCTCGTAAGAGAGAACT
AGATCGAAGGCAGGAGCTGGAAGTCGCAAGAGAGAATGCAAGAAAAAAGGAAATGGAGGG
ACAGAGTCAAAGATTGGATATGCTAAGAGCTCAAATTGAAGGGACATACAAACAAGATAT
GCCGCCTCACCCTAGCATGGGATTTAACCATCAACCAGGTTTTGGTCGCCCTGGTAGTCC
ACTCATGCCGCCACAATTGCACGATCAGCTAGCTAAAGAACTAATGGGAGGACAGGGAGG
TCTAGCACCAGCACCGCTTATCAAAGTGAAGTCTTATCACCATATACATTCTGACATGAA
CAAACTGATGGACTCTCTGGACAAAATGTCAGATTCGGATCAAAACTTCTACAGACTTGC
ATATGAACATTGTAATAACATATGTACCTGTAAAGCACAAAATTATAAAATCGAGGACCC
CATGTTTGAACGGCTTGAACCTTGTCCCAAAAGTTTTGACTGTCAGTCTTATTCTCATTG
GAAACATAGCATAGCCATGTCTTGGTTAAATAGATTCATTGATGGTTTTGAATGGAAATT
TAATAAATTGAAATTACAATTGTTACCAATTGGTCCTTTTCCTGATTTTGTTGAAAACTT
TCGTTCAAAAGATGGATTGAATTTGTTTCAGATGTTGGTACAATTTTTAAGTTCATTTTT
TTCAGGGTCAATAGTTGAAATGTTGCCCCAGCTAAATATAGAAGACTTGAACGTCCGTAA
AAGACAGCATTCTTTTACTGGAAAGGAACAATACCTTGTCACGGACTTCTTACCGTTTCT
TAAATCCCATGTTCCGCGAGACAGTTTTTGTGTCGTTGCATTGACCTGGCACGACCTTTA
CCCAAGTGAAGATCTTAATTTTGTTCTTGGACAGGCTAGCTTCTACCACTACTCGTGTGT
TGCAAGTTTTGGTCGTTTTGACCCAACATATGTACGTGGGTTTAAGGGTAGAAATGAAGG
AATTGATGTGAAAGACATGGAAGATATATCTGTAGTTGACGCAGCTTTACTGTGGAAACT
GATTAAGGTTGTAACGCATGAAACATGCCATGTGTTTGGTCTTGCACATTGTGGAACATT
CTCTTGCTTAATGAACAATAGTTGTTCTTCTGAAGAAGCGTTATCCCAGCCTTTAACATT
ATGTCCAATATGTATGAGAAAGATACAACGTGCTTGTTCTAAATGGGGCCAGGACAAGTT
CCCTTTTCAGGTTAAAACACACCTAGCGTCGTTGGCACAATATCTACGAACAGTAATGCT
ACCTCTGATGGGTTCTAATGATGAAATGACAAATACTAGGGTGCATAATACACTGCAGTG
GATTGACAGAGTTTTAAACTTTATATGAAAAAAAGCCCTTTAAATTATATGAAAACAACA
GTTCTTGTTTTTATTAAATGCCAAAAAACTTATTTATTGTTATTCGTTCAAGATAAATTA
GTTCTTGCATATTACATGTACTACTTATACAATAAGTTAAACCTATGCAAATGTTAAATT
GTTTATTTTAAACTTTTGTATTTAAAATGCCACTGTGATGTAGAAATTATTTTGGGCAGT
ACTGTTAAGACAACTTTATTTTTCAAAGTTACATTTAAAACTCTAAAGGTGGCTGTACAC
CGTATCCGGCATTTGAATTCGCTTGCGAAG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[116-214] 6.3E-23 - T[215-303] 2.4E-19 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[139-274] 1.77E-31 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[139-212] 17.882 - T[214-295] 12.032 |
| SMART |
RRM_dom (IPR000504) - T[140-208] 2.3E-17 - T[215-283] 1.2E-8 |
| Pfam |
RRM_dom (IPR000504) - T[141-202] 9.2E-15 - T[217-273] 2.0E-13 |
| Pfam |
NOPS (IPR012975) - T[288-338] 6.6E-21 |
| CDD |
Pept_M54_archaemetzincn (IPR012962) - T[587-790] 1.81974E-36 |
| Gene3D |
MetalloPept_cat_dom_sf (IPR024079) - T[607-796] 4.1E-37 |
| Pfam |
Pept_M54_archaemetzincn (IPR012962) - T[739-790] 4.2E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NONO_HUMAN | 55.15 % | 328 | 1.36E-103 |
| SFPQ_HUMAN | 56.209 % | 345 | 4.73E-107 |
| PSPC1_HUMAN | 62.143 % | 336 | 5.73E-106 |