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- Transcript 'KH2012:KH.C6.29.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.C6.29.v2.A.SL1-2
Possible name(s)
NONO; PSPC1; SFPQ
Gene model
Location
KhC6 [1,533,633 / 1,539,965]
Amino acid sequence
Length: 549
>KH.C6.29.v2.A.SL1-2
FNNQSRGFKFFCVNSAKIMPANRYGGGGGSGNGRYFNNNNRQDRNYQQNRRHPPNHQTPM
PPPPVPPMMKNSPLPPKMPVPVPAVDMKKEKSPAKMKVPEPVPPPSLANETGHSSRNESN
DSHQNASNRPTERKFTQRSRLFIGNLPTSITEEEFKNLFRPFGEVSETFVNAEKGFGFVR
MDTRTNAERAKWELDGKVMRSNRQLRVRFATHGAALSVKNISPFVSNELLEEAFSQFGPV
ERAVVVVDDRGKSMERGIVEFARKSSATKALQQIRDGCFLLTSSPRAVVASTLEQEDTED
GLMERNVSKSQSYFQEREAPPRFAKPNSFEEEFARRWKALYDLERQQREHLEKNIQEAKE
KLETEMENAIHDHQTMLMKQDLLRRQEELQRLEEARKRELDRRQELEVARENARKKEMEG
QSQRLDMLRAQIEGTYKQDMPPHPSMGFNHQPGFGRPGSPLMPPQLHDQLAKELMGGQGG
LAPAPSRFDQNRELAMLSQRGIPGGMPPNMPRGFGGPGPGFGGPHHPMGPGQRRGYDMDF
EHNQKRRRF
Nucleotide sequence
Length: 2,334
>KH2012:KH.C6.29.v2.A.SL1-2
GTTTAATAATCAAAGTAGAGGTTTTAAATTTTTTTGTGTAAACTCGGCGAAAATAATGCC
TGCGAATCGTTACGGCGGCGGGGGAGGCAGTGGAAACGGTCGTTATTTTAACAACAACAA
TAGACAAGACCGAAATTATCAACAAAACAGACGCCACCCACCAAACCATCAAACACCCAT
GCCCCCACCCCCAGTGCCCCCTATGATGAAAAATAGCCCTCTTCCACCAAAAATGCCTGT
TCCTGTACCAGCAGTGGATATGAAAAAAGAAAAAAGTCCTGCGAAAATGAAAGTTCCAGA
GCCAGTACCACCCCCAAGCTTAGCCAATGAAACGGGGCATTCAAGTCGGAATGAGTCGAA
TGATTCACACCAAAACGCATCGAACCGACCAACAGAACGTAAATTCACTCAACGCAGTCG
TTTATTCATTGGCAATCTGCCAACCAGTATAACCGAAGAAGAATTTAAAAACTTGTTTCG
TCCTTTTGGGGAAGTATCCGAAACTTTTGTCAATGCTGAAAAAGGATTCGGTTTTGTAAG
AATGGATACAAGGACAAATGCTGAGAGAGCTAAATGGGAACTGGATGGCAAAGTTATGCG
ATCGAACAGACAGCTGCGTGTACGATTTGCCACACACGGTGCTGCACTTAGTGTTAAGAA
CATATCACCCTTTGTTTCAAACGAACTTCTCGAGGAAGCTTTCTCGCAGTTTGGTCCGGT
TGAACGAGCAGTGGTTGTCGTTGACGACCGTGGAAAATCAATGGAGCGTGGCATTGTTGA
ATTTGCGAGGAAATCTTCGGCAACAAAAGCTCTTCAACAAATCAGGGATGGCTGTTTCTT
ACTCACATCTTCACCAAGAGCAGTTGTAGCTTCAACATTGGAGCAGGAAGATACAGAAGA
TGGTCTTATGGAGAGGAATGTTTCAAAATCTCAATCATACTTCCAAGAGCGAGAGGCTCC
TCCGAGGTTTGCGAAACCAAACTCCTTTGAGGAGGAATTCGCTCGCAGATGGAAAGCTCT
TTATGATCTCGAGCGTCAGCAACGAGAACATCTCGAAAAAAACATCCAGGAGGCAAAAGA
GAAACTTGAAACAGAGATGGAAAATGCGATTCATGATCATCAAACTATGCTCATGAAACA
AGATCTTCTCAGAAGACAAGAAGAGCTTCAAAGATTGGAGGAAGCTCGTAAGAGAGAACT
AGATCGAAGGCAGGAGCTGGAAGTCGCAAGAGAGAATGCAAGAAAAAAGGAAATGGAGGG
ACAGAGTCAAAGATTGGATATGCTAAGAGCTCAAATTGAAGGGACATACAAACAAGATAT
GCCGCCTCACCCTAGCATGGGATTTAACCATCAACCAGGTTTTGGTCGCCCTGGTAGTCC
ACTCATGCCGCCACAATTGCACGATCAGCTAGCTAAAGAACTAATGGGAGGACAGGGAGG
TCTAGCACCAGCACCGTCACGATTTGACCAAAACCGAGAACTGGCGATGCTTTCCCAGCG
GGGAATTCCCGGGGGTATGCCCCCAAATATGCCCCGGGGTTTTGGGGGGCCAGGGCCTGG
CTTCGGGGGCCCGCATCACCCCATGGGGCCCGGTCAACGCCGGGGTTATGACATGGATTT
TGAGCATAACCAAAAGCGCAGAAGATTCTGATTTGTAAATCATGGCCGGCAACTAACTGC
CAAGTGACTTTAAAACTGGCTGTGAGTCATATGAGACTATTTTAATGCTACAAGCTACAT
TTGAATGACATTTCAGACAATTTCATATGAGACTTTAAATACTCAAGACAAATTTTGAAT
GAAATTTAAGACAGTTATCAATTTTTCGCTGCGCATTTTAGTAGTAGTTGATAAAACAAA
TTAAGATCTACGTTCTGTACATTTTGTATAGTTCTAAACAAAAAGTCTAAACAGCAAACA
TGGAGCTACAATACTATACCAATATATCTTTCTGTCAGTATGCTACTATTGTTGGTATGT
CTCTTAAACTTTGCATGTGTAATGTGGGTCATGGGCACCAAACTTTTATAAAAAAAGGGG
AGGCAGGAATAGTTGTCGGTTACATATGCATTTCTATTAAAAAGTTGAAACTTTTCGACC
ATATTTTTATAAATTAATGTAATGCAGAAAATTCTTGGAGGAGGCCTGCCCCCCTTGCCA
CCCCAGGTTTGGCGCCTATGTGTATGACTACTAGTTTATTGCACCTACAAGTCGAAATCT
TAGGCATTCTTGTGTAACTGAGTGTACGTATTTCGGTTTATCGTAAATTGTGTCTTAACT
AACACTAGATTTTAAATGAGTAAATGTACAGTCTAATAAACAATTTCAGATAGA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[116-214] 3.3E-23 - T[215-303] 1.3E-19 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[139-274] 8.83E-32 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[139-212] 17.882 - T[214-295] 12.032 |
| SMART |
RRM_dom (IPR000504) - T[140-208] 2.3E-17 - T[215-283] 1.2E-8 |
| Pfam |
RRM_dom (IPR000504) - T[141-202] 5.2E-15 - T[216-273] 1.1E-13 |
| Pfam |
NOPS (IPR012975) - T[288-338] 3.8E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NONO_HUMAN | 55.15 % | 328 | 3.74E-107 |
| SFPQ_HUMAN | 54.375 % | 344 | 2.09E-110 |
| PSPC1_HUMAN | 62.143 % | 336 | 2.73E-109 |