Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C7.159.v1.A.nonSL10-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C7.159

Location

KhC7 [947,802 / 949,660]

Sequences

Amino acid sequence

Length: 125

>KH.C7.159.v1.A.nonSL10-1
GLDIISSAQFKLEQILIFPFLNIQENMGDKRKKESILDLSKYLDRPIRVKFHGGREASGV
LKGFDPLLNLVLDSTTETLRDPDDPYKLSDDTRALGLTVCRGTSVVLICPQDGMEEIPNP
FVQHT

Nucleotide sequence

Length: 1,101

>KH2012:KH.C7.159.v1.A.nonSL10-1
GGGTTAGATATCATTAGCTCTGCTCAATTTAAACTTGAACAAATCTTGATTTTTCCATTC
TTGAACATCCAAGAAAACATGGGGGACAAAAGGAAGAAGGAAAGTATTTTGGATCTTTCA
AAGTATCTTGATCGACCAATCAGAGTAAAGTTCCATGGAGGGAGAGAGGCAAGTGGTGTG
CTGAAAGGTTTCGATCCGCTGCTTAATTTGGTGCTTGACAGTACAACAGAGACTTTAAGA
GATCCAGATGACCCTTACAAGCTGAGTGATGATACGAGGGCATTGGGGCTTACTGTGTGT
AGAGGCACTTCTGTGGTTTTAATTTGCCCACAAGATGGCATGGAAGAGATACCAAATCCG
TTTGTTCAGCACACATGAAGAAGCAATTAAATTTGTAAAATCTTAATTCAATTATAAGTT
GGTTGGATTGAAAACAGGGAGCTACCATTCATTATCATCCACTAACTGATTTACTCTGCC
ATTCTTCTTTTATTACATTATGTTTATAGCTGTTTTCCTGAAAAAAAAAACAAAAACATC
TAAGTCTTTAATCTTGCTGAAAAAAGAAACTCAATTCTTTAATATTATGACCGCCATTGT
AGCAAACTAGAGTTGAATGTTCTGTGATATTCAATATGTTTTACATACTGAACTTATTTA
GAAAGACAACGATCGCAGTGCAACAAAAGTTTATTGCAAAAAAAGTCTGAGTAACTAGAG
TCTCAAGCATTTACATTAAAAAGCCGGTGAAATACACTACATGGTGTTAACACACCTTTG
AAAAACCTCCAACAAGTTTACATCTAATGTGGAAATATTAGGGGTTTAAAAAATTTGTTT
AAAATTATTGGAATGGCTTGTAAGGGTTAACATTTAGTACGTGTTAGGGAAGAATACAAA
AGTAATGTAAAGTATTGGATAACATTAGTCTAGTTATTTGATGTTCTCAAACAATAACAT
TTTATATAATAAGTTACAGTGCCAATAACAATTTGTTCTGCTTTTTCAGTAACATTCTTA
GATTCTTTAATACTATTCTGTGGGTATGCAAATGTATGATATTTAAGTTTGAAAGTGTTG
AATGCGGGTGCAGTCAGTTCA

InterProScan

CDD	Lsm7 (IPR017132) - T[33-121] 2.17014E-59
SMART	LSM_dom_euk/arc (IPR001163) - T[37-110] 3.1E-21
Pfam	LSM_dom_euk/arc (IPR001163) - T[38-110] 4.1E-19
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[39-115] 1.38E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LSM7_HUMAN	80.208 %	166	7.43E-55