Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C7.159.v1.A.nonSL4-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C7.159

Location

KhC7 [947,786 / 949,660]

Sequences

Amino acid sequence

Length: 130

>KH.C7.159.v1.A.nonSL4-1
YSILTGLDIISSAQFKLEQILIFPFLNIQENMGDKRKKESILDLSKYLDRPIRVKFHGGR
EASGVLKGFDPLLNLVLDSTTETLRDPDDPYKLSDDTRALGLTVCRGTSVVLICPQDGME
EIPNPFVQHT

Nucleotide sequence

Length: 1,117

>KH2012:KH.C7.159.v1.A.nonSL4-1
ATATTCAATTTTAACAGGGTTAGATATCATTAGCTCTGCTCAATTTAAACTTGAACAAAT
CTTGATTTTTCCATTCTTGAACATCCAAGAAAACATGGGGGACAAAAGGAAGAAGGAAAG
TATTTTGGATCTTTCAAAGTATCTTGATCGACCAATCAGAGTAAAGTTCCATGGAGGGAG
AGAGGCAAGTGGTGTGCTGAAAGGTTTCGATCCGCTGCTTAATTTGGTGCTTGACAGTAC
AACAGAGACTTTAAGAGATCCAGATGACCCTTACAAGCTGAGTGATGATACGAGGGCATT
GGGGCTTACTGTGTGTAGAGGCACTTCTGTGGTTTTAATTTGCCCACAAGATGGCATGGA
AGAGATACCAAATCCGTTTGTTCAGCACACATGAAGAAGCAATTAAATTTGTAAAATCTT
AATTCAATTATAAGTTGGTTGGATTGAAAACAGGGAGCTACCATTCATTATCATCCACTA
ACTGATTTACTCTGCCATTCTTCTTTTATTACATTATGTTTATAGCTGTTTTCCTGAAAA
AAAAAACAAAAACATCTAAGTCTTTAATCTTGCTGAAAAAAGAAACTCAATTCTTTAATA
TTATGACCGCCATTGTAGCAAACTAGAGTTGAATGTTCTGTGATATTCAATATGTTTTAC
ATACTGAACTTATTTAGAAAGACAACGATCGCAGTGCAACAAAAGTTTATTGCAAAAAAA
GTCTGAGTAACTAGAGTCTCAAGCATTTACATTAAAAAGCCGGTGAAATACACTACATGG
TGTTAACACACCTTTGAAAAACCTCCAACAAGTTTACATCTAATGTGGAAATATTAGGGG
TTTAAAAAATTTGTTTAAAATTATTGGAATGGCTTGTAAGGGTTAACATTTAGTACGTGT
TAGGGAAGAATACAAAAGTAATGTAAAGTATTGGATAACATTAGTCTAGTTATTTGATGT
TCTCAAACAATAACATTTTATATAATAAGTTACAGTGCCAATAACAATTTGTTCTGCTTT
TTCAGTAACATTCTTAGATTCTTTAATACTATTCTGTGGGTATGCAAATGTATGATATTT
AAGTTTGAAAGTGTTGAATGCGGGTGCAGTCAGTTCA

InterProScan

CDD	Lsm7 (IPR017132) - T[38-126] 1.78318E-59
SMART	LSM_dom_euk/arc (IPR001163) - T[42-115] 3.1E-21
Pfam	LSM_dom_euk/arc (IPR001163) - T[43-115] 4.6E-19
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[44-120] 1.56E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LSM7_HUMAN	80.208 %	166	7.19E-55