Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C7.159.v1.A.nonSL5-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C7.159

Location

KhC7 [947,820 / 949,660]

Sequences

Amino acid sequence

Length: 119

>KH.C7.159.v1.A.nonSL5-1
SAQFKLEQILIFPFLNIQENMGDKRKKESILDLSKYLDRPIRVKFHGGREASGVLKGFDP
LLNLVLDSTTETLRDPDDPYKLSDDTRALGLTVCRGTSVVLICPQDGMEEIPNPFVQHT

Nucleotide sequence

Length: 1,083

>KH2012:KH.C7.159.v1.A.nonSL5-1
TCTGCTCAATTTAAACTTGAACAAATCTTGATTTTTCCATTCTTGAACATCCAAGAAAAC
ATGGGGGACAAAAGGAAGAAGGAAAGTATTTTGGATCTTTCAAAGTATCTTGATCGACCA
ATCAGAGTAAAGTTCCATGGAGGGAGAGAGGCAAGTGGTGTGCTGAAAGGTTTCGATCCG
CTGCTTAATTTGGTGCTTGACAGTACAACAGAGACTTTAAGAGATCCAGATGACCCTTAC
AAGCTGAGTGATGATACGAGGGCATTGGGGCTTACTGTGTGTAGAGGCACTTCTGTGGTT
TTAATTTGCCCACAAGATGGCATGGAAGAGATACCAAATCCGTTTGTTCAGCACACATGA
AGAAGCAATTAAATTTGTAAAATCTTAATTCAATTATAAGTTGGTTGGATTGAAAACAGG
GAGCTACCATTCATTATCATCCACTAACTGATTTACTCTGCCATTCTTCTTTTATTACAT
TATGTTTATAGCTGTTTTCCTGAAAAAAAAAACAAAAACATCTAAGTCTTTAATCTTGCT
GAAAAAAGAAACTCAATTCTTTAATATTATGACCGCCATTGTAGCAAACTAGAGTTGAAT
GTTCTGTGATATTCAATATGTTTTACATACTGAACTTATTTAGAAAGACAACGATCGCAG
TGCAACAAAAGTTTATTGCAAAAAAAGTCTGAGTAACTAGAGTCTCAAGCATTTACATTA
AAAAGCCGGTGAAATACACTACATGGTGTTAACACACCTTTGAAAAACCTCCAACAAGTT
TACATCTAATGTGGAAATATTAGGGGTTTAAAAAATTTGTTTAAAATTATTGGAATGGCT
TGTAAGGGTTAACATTTAGTACGTGTTAGGGAAGAATACAAAAGTAATGTAAAGTATTGG
ATAACATTAGTCTAGTTATTTGATGTTCTCAAACAATAACATTTTATATAATAAGTTACA
GTGCCAATAACAATTTGTTCTGCTTTTTCAGTAACATTCTTAGATTCTTTAATACTATTC
TGTGGGTATGCAAATGTATGATATTTAAGTTTGAAAGTGTTGAATGCGGGTGCAGTCAGT
TCA

InterProScan

CDD	Lsm7 (IPR017132) - T[27-115] 8.74116E-60
SMART	LSM_dom_euk/arc (IPR001163) - T[31-104] 3.1E-21
Pfam	LSM_dom_euk/arc (IPR001163) - T[32-104] 3.6E-19
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[33-109] 1.18E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LSM7_HUMAN	80.208 %	166	5.43E-55