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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.L170.28.v2...' > 
  2. EST 'AHC0AAA222YI17_RM1' > 
  3. Transcript 'KH2012:KH.C7.159.v1....'

Transcript Model

Transcript Id

KH2012:KH.C7.159.v1.A.nonSL5-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C7.159

Location

KhC7 [947,820 / 949,660]

Sequences

Amino acid sequence

Length: 119

>KH.C7.159.v1.A.nonSL5-1
SAQFKLEQILIFPFLNIQENMGDKRKKESILDLSKYLDRPIRVKFHGGREASGVLKGFDP
LLNLVLDSTTETLRDPDDPYKLSDDTRALGLTVCRGTSVVLICPQDGMEEIPNPFVQHT

Nucleotide sequence

Length: 1,083

>KH2012:KH.C7.159.v1.A.nonSL5-1
TCTGCTCAATTTAAACTTGAACAAATCTTGATTTTTCCATTCTTGAACATCCAAGAAAAC
ATGGGGGACAAAAGGAAGAAGGAAAGTATTTTGGATCTTTCAAAGTATCTTGATCGACCA
ATCAGAGTAAAGTTCCATGGAGGGAGAGAGGCAAGTGGTGTGCTGAAAGGTTTCGATCCG
CTGCTTAATTTGGTGCTTGACAGTACAACAGAGACTTTAAGAGATCCAGATGACCCTTAC
AAGCTGAGTGATGATACGAGGGCATTGGGGCTTACTGTGTGTAGAGGCACTTCTGTGGTT
TTAATTTGCCCACAAGATGGCATGGAAGAGATACCAAATCCGTTTGTTCAGCACACATGA
AGAAGCAATTAAATTTGTAAAATCTTAATTCAATTATAAGTTGGTTGGATTGAAAACAGG
GAGCTACCATTCATTATCATCCACTAACTGATTTACTCTGCCATTCTTCTTTTATTACAT
TATGTTTATAGCTGTTTTCCTGAAAAAAAAAACAAAAACATCTAAGTCTTTAATCTTGCT
GAAAAAAGAAACTCAATTCTTTAATATTATGACCGCCATTGTAGCAAACTAGAGTTGAAT
GTTCTGTGATATTCAATATGTTTTACATACTGAACTTATTTAGAAAGACAACGATCGCAG
TGCAACAAAAGTTTATTGCAAAAAAAGTCTGAGTAACTAGAGTCTCAAGCATTTACATTA
AAAAGCCGGTGAAATACACTACATGGTGTTAACACACCTTTGAAAAACCTCCAACAAGTT
TACATCTAATGTGGAAATATTAGGGGTTTAAAAAATTTGTTTAAAATTATTGGAATGGCT
TGTAAGGGTTAACATTTAGTACGTGTTAGGGAAGAATACAAAAGTAATGTAAAGTATTGG
ATAACATTAGTCTAGTTATTTGATGTTCTCAAACAATAACATTTTATATAATAAGTTACA
GTGCCAATAACAATTTGTTCTGCTTTTTCAGTAACATTCTTAGATTCTTTAATACTATTC
TGTGGGTATGCAAATGTATGATATTTAAGTTTGAAAGTGTTGAATGCGGGTGCAGTCAGT
TCA

InterProScan

CDD
Lsm7 (IPR017132) - T[27-115] 8.74116E-60
SMART
LSM_dom_euk/arc (IPR001163) - T[31-104] 3.1E-21
Pfam
LSM_dom_euk/arc (IPR001163) - T[32-104] 3.6E-19
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[33-109] 1.18E-18

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LSM7_HUMAN 80.208 % 166 5.43E-55