Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C7.159.v1.A.nonSL7-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C7.159

Location

KhC7 [947,814 / 949,660]

Sequences

Amino acid sequence

Length: 121

>KH.C7.159.v1.A.nonSL7-1
ISSAQFKLEQILIFPFLNIQENMGDKRKKESILDLSKYLDRPIRVKFHGGREASGVLKGF
DPLLNLVLDSTTETLRDPDDPYKLSDDTRALGLTVCRGTSVVLICPQDGMEEIPNPFVQH
T

Nucleotide sequence

Length: 1,089

>KH2012:KH.C7.159.v1.A.nonSL7-1
ATTAGCTCTGCTCAATTTAAACTTGAACAAATCTTGATTTTTCCATTCTTGAACATCCAA
GAAAACATGGGGGACAAAAGGAAGAAGGAAAGTATTTTGGATCTTTCAAAGTATCTTGAT
CGACCAATCAGAGTAAAGTTCCATGGAGGGAGAGAGGCAAGTGGTGTGCTGAAAGGTTTC
GATCCGCTGCTTAATTTGGTGCTTGACAGTACAACAGAGACTTTAAGAGATCCAGATGAC
CCTTACAAGCTGAGTGATGATACGAGGGCATTGGGGCTTACTGTGTGTAGAGGCACTTCT
GTGGTTTTAATTTGCCCACAAGATGGCATGGAAGAGATACCAAATCCGTTTGTTCAGCAC
ACATGAAGAAGCAATTAAATTTGTAAAATCTTAATTCAATTATAAGTTGGTTGGATTGAA
AACAGGGAGCTACCATTCATTATCATCCACTAACTGATTTACTCTGCCATTCTTCTTTTA
TTACATTATGTTTATAGCTGTTTTCCTGAAAAAAAAAACAAAAACATCTAAGTCTTTAAT
CTTGCTGAAAAAAGAAACTCAATTCTTTAATATTATGACCGCCATTGTAGCAAACTAGAG
TTGAATGTTCTGTGATATTCAATATGTTTTACATACTGAACTTATTTAGAAAGACAACGA
TCGCAGTGCAACAAAAGTTTATTGCAAAAAAAGTCTGAGTAACTAGAGTCTCAAGCATTT
ACATTAAAAAGCCGGTGAAATACACTACATGGTGTTAACACACCTTTGAAAAACCTCCAA
CAAGTTTACATCTAATGTGGAAATATTAGGGGTTTAAAAAATTTGTTTAAAATTATTGGA
ATGGCTTGTAAGGGTTAACATTTAGTACGTGTTAGGGAAGAATACAAAAGTAATGTAAAG
TATTGGATAACATTAGTCTAGTTATTTGATGTTCTCAAACAATAACATTTTATATAATAA
GTTACAGTGCCAATAACAATTTGTTCTGCTTTTTCAGTAACATTCTTAGATTCTTTAATA
CTATTCTGTGGGTATGCAAATGTATGATATTTAAGTTTGAAAGTGTTGAATGCGGGTGCA
GTCAGTTCA

InterProScan

CDD	Lsm7 (IPR017132) - T[29-117] 8.67551E-60
SMART	LSM_dom_euk/arc (IPR001163) - T[33-106] 3.1E-21
Pfam	LSM_dom_euk/arc (IPR001163) - T[34-106] 3.7E-19
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[35-111] 1.26E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LSM7_HUMAN	80.208 %	166	4.62E-55