Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C7.159.v1.A.nonSL8-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C7.159

Location

KhC7 [947,808 / 949,660]

Sequences

Amino acid sequence

Length: 123

>KH.C7.159.v1.A.nonSL8-1
DIISSAQFKLEQILIFPFLNIQENMGDKRKKESILDLSKYLDRPIRVKFHGGREASGVLK
GFDPLLNLVLDSTTETLRDPDDPYKLSDDTRALGLTVCRGTSVVLICPQDGMEEIPNPFV
QHT

Nucleotide sequence

Length: 1,095

>KH2012:KH.C7.159.v1.A.nonSL8-1
GATATCATTAGCTCTGCTCAATTTAAACTTGAACAAATCTTGATTTTTCCATTCTTGAAC
ATCCAAGAAAACATGGGGGACAAAAGGAAGAAGGAAAGTATTTTGGATCTTTCAAAGTAT
CTTGATCGACCAATCAGAGTAAAGTTCCATGGAGGGAGAGAGGCAAGTGGTGTGCTGAAA
GGTTTCGATCCGCTGCTTAATTTGGTGCTTGACAGTACAACAGAGACTTTAAGAGATCCA
GATGACCCTTACAAGCTGAGTGATGATACGAGGGCATTGGGGCTTACTGTGTGTAGAGGC
ACTTCTGTGGTTTTAATTTGCCCACAAGATGGCATGGAAGAGATACCAAATCCGTTTGTT
CAGCACACATGAAGAAGCAATTAAATTTGTAAAATCTTAATTCAATTATAAGTTGGTTGG
ATTGAAAACAGGGAGCTACCATTCATTATCATCCACTAACTGATTTACTCTGCCATTCTT
CTTTTATTACATTATGTTTATAGCTGTTTTCCTGAAAAAAAAAACAAAAACATCTAAGTC
TTTAATCTTGCTGAAAAAAGAAACTCAATTCTTTAATATTATGACCGCCATTGTAGCAAA
CTAGAGTTGAATGTTCTGTGATATTCAATATGTTTTACATACTGAACTTATTTAGAAAGA
CAACGATCGCAGTGCAACAAAAGTTTATTGCAAAAAAAGTCTGAGTAACTAGAGTCTCAA
GCATTTACATTAAAAAGCCGGTGAAATACACTACATGGTGTTAACACACCTTTGAAAAAC
CTCCAACAAGTTTACATCTAATGTGGAAATATTAGGGGTTTAAAAAATTTGTTTAAAATT
ATTGGAATGGCTTGTAAGGGTTAACATTTAGTACGTGTTAGGGAAGAATACAAAAGTAAT
GTAAAGTATTGGATAACATTAGTCTAGTTATTTGATGTTCTCAAACAATAACATTTTATA
TAATAAGTTACAGTGCCAATAACAATTTGTTCTGCTTTTTCAGTAACATTCTTAGATTCT
TTAATACTATTCTGTGGGTATGCAAATGTATGATATTTAAGTTTGAAAGTGTTGAATGCG
GGTGCAGTCAGTTCA

InterProScan

CDD	Lsm7 (IPR017132) - T[31-119] 1.53986E-59
SMART	LSM_dom_euk/arc (IPR001163) - T[35-108] 3.1E-21
Pfam	LSM_dom_euk/arc (IPR001163) - T[36-108] 3.9E-19
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[37-113] 1.31E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LSM7_HUMAN	80.208 %	166	5.96E-55