Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C7.159.v1.A.nonSL9-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C7.159

Location

KhC7 [947,801 / 949,660]

Sequences

Amino acid sequence

Length: 125

>KH.C7.159.v1.A.nonSL9-1
GLDIISSAQFKLEQILIFPFLNIQENMGDKRKKESILDLSKYLDRPIRVKFHGGREASGV
LKGFDPLLNLVLDSTTETLRDPDDPYKLSDDTRALGLTVCRGTSVVLICPQDGMEEIPNP
FVQHT

Nucleotide sequence

Length: 1,102

>KH2012:KH.C7.159.v1.A.nonSL9-1
AGGGTTAGATATCATTAGCTCTGCTCAATTTAAACTTGAACAAATCTTGATTTTTCCATT
CTTGAACATCCAAGAAAACATGGGGGACAAAAGGAAGAAGGAAAGTATTTTGGATCTTTC
AAAGTATCTTGATCGACCAATCAGAGTAAAGTTCCATGGAGGGAGAGAGGCAAGTGGTGT
GCTGAAAGGTTTCGATCCGCTGCTTAATTTGGTGCTTGACAGTACAACAGAGACTTTAAG
AGATCCAGATGACCCTTACAAGCTGAGTGATGATACGAGGGCATTGGGGCTTACTGTGTG
TAGAGGCACTTCTGTGGTTTTAATTTGCCCACAAGATGGCATGGAAGAGATACCAAATCC
GTTTGTTCAGCACACATGAAGAAGCAATTAAATTTGTAAAATCTTAATTCAATTATAAGT
TGGTTGGATTGAAAACAGGGAGCTACCATTCATTATCATCCACTAACTGATTTACTCTGC
CATTCTTCTTTTATTACATTATGTTTATAGCTGTTTTCCTGAAAAAAAAAACAAAAACAT
CTAAGTCTTTAATCTTGCTGAAAAAAGAAACTCAATTCTTTAATATTATGACCGCCATTG
TAGCAAACTAGAGTTGAATGTTCTGTGATATTCAATATGTTTTACATACTGAACTTATTT
AGAAAGACAACGATCGCAGTGCAACAAAAGTTTATTGCAAAAAAAGTCTGAGTAACTAGA
GTCTCAAGCATTTACATTAAAAAGCCGGTGAAATACACTACATGGTGTTAACACACCTTT
GAAAAACCTCCAACAAGTTTACATCTAATGTGGAAATATTAGGGGTTTAAAAAATTTGTT
TAAAATTATTGGAATGGCTTGTAAGGGTTAACATTTAGTACGTGTTAGGGAAGAATACAA
AAGTAATGTAAAGTATTGGATAACATTAGTCTAGTTATTTGATGTTCTCAAACAATAACA
TTTTATATAATAAGTTACAGTGCCAATAACAATTTGTTCTGCTTTTTCAGTAACATTCTT
AGATTCTTTAATACTATTCTGTGGGTATGCAAATGTATGATATTTAAGTTTGAAAGTGTT
GAATGCGGGTGCAGTCAGTTCA

InterProScan

CDD	Lsm7 (IPR017132) - T[33-121] 2.17014E-59
SMART	LSM_dom_euk/arc (IPR001163) - T[37-110] 3.1E-21
Pfam	LSM_dom_euk/arc (IPR001163) - T[38-110] 4.1E-19
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[39-115] 1.38E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LSM7_HUMAN	80.208 %	166	7.43E-55