Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C7.159.v1.A.SL1-1

Possible name(s)

LSM7; LSM8; SNRPG

Gene model

KH2012:KH.C7.159

Location

KhC7 [947,803 / 949,660]

Sequences

Amino acid sequence

Length: 124

>KH.C7.159.v1.A.SL1-1
LDIISSAQFKLEQILIFPFLNIQENMGDKRKKESILDLSKYLDRPIRVKFHGGREASGVL
KGFDPLLNLVLDSTTETLRDPDDPYKLSDDTRALGLTVCRGTSVVLICPQDGMEEIPNPF
VQHT

Nucleotide sequence

Length: 1,100

>KH2012:KH.C7.159.v1.A.SL1-1
GGTTAGATATCATTAGCTCTGCTCAATTTAAACTTGAACAAATCTTGATTTTTCCATTCT
TGAACATCCAAGAAAACATGGGGGACAAAAGGAAGAAGGAAAGTATTTTGGATCTTTCAA
AGTATCTTGATCGACCAATCAGAGTAAAGTTCCATGGAGGGAGAGAGGCAAGTGGTGTGC
TGAAAGGTTTCGATCCGCTGCTTAATTTGGTGCTTGACAGTACAACAGAGACTTTAAGAG
ATCCAGATGACCCTTACAAGCTGAGTGATGATACGAGGGCATTGGGGCTTACTGTGTGTA
GAGGCACTTCTGTGGTTTTAATTTGCCCACAAGATGGCATGGAAGAGATACCAAATCCGT
TTGTTCAGCACACATGAAGAAGCAATTAAATTTGTAAAATCTTAATTCAATTATAAGTTG
GTTGGATTGAAAACAGGGAGCTACCATTCATTATCATCCACTAACTGATTTACTCTGCCA
TTCTTCTTTTATTACATTATGTTTATAGCTGTTTTCCTGAAAAAAAAAACAAAAACATCT
AAGTCTTTAATCTTGCTGAAAAAAGAAACTCAATTCTTTAATATTATGACCGCCATTGTA
GCAAACTAGAGTTGAATGTTCTGTGATATTCAATATGTTTTACATACTGAACTTATTTAG
AAAGACAACGATCGCAGTGCAACAAAAGTTTATTGCAAAAAAAGTCTGAGTAACTAGAGT
CTCAAGCATTTACATTAAAAAGCCGGTGAAATACACTACATGGTGTTAACACACCTTTGA
AAAACCTCCAACAAGTTTACATCTAATGTGGAAATATTAGGGGTTTAAAAAATTTGTTTA
AAATTATTGGAATGGCTTGTAAGGGTTAACATTTAGTACGTGTTAGGGAAGAATACAAAA
GTAATGTAAAGTATTGGATAACATTAGTCTAGTTATTTGATGTTCTCAAACAATAACATT
TTATATAATAAGTTACAGTGCCAATAACAATTTGTTCTGCTTTTTCAGTAACATTCTTAG
ATTCTTTAATACTATTCTGTGGGTATGCAAATGTATGATATTTAAGTTTGAAAGTGTTGA
ATGCGGGTGCAGTCAGTTCA

InterProScan

CDD	Lsm7 (IPR017132) - T[32-120] 2.08534E-59
SMART	LSM_dom_euk/arc (IPR001163) - T[36-109] 3.1E-21
Pfam	LSM_dom_euk/arc (IPR001163) - T[37-109] 4.0E-19
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[38-114] 1.33E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LSM7_HUMAN	80.208 %	166	5.8E-55